Hmm - /mnt definitely should not be empty. There's nothing unusual in the log you sent so could you please send me the one from the worker? It's in the same location (/mnt/cm/paster.log) If it's not there, please track the boot procedure logs as follows and can send those logs: 1. /usr/bin/ec2autorun.log 2. /tmp/cm/cm_boot.py.log 3. /mnt/cm/paster.log
Thanks, Enis On Fri, Jun 19, 2015 at 5:02 PM, Nicholas Dickens < nick.dick...@glasgow.ac.uk> wrote: > Thanks – I’ve attached the log. I just tried to start a worker and let > it go to the first reboot and then copied this log. I logged into the > worker and it looks ok (dmesg, etc) the only noticable thing was /mnt is > empty (just a lost+found directory) and I was expecting to see an nfs mount > for galaxy export or something. But I’m still finding my way round the > system. It may also have been the time in the reboot cycle that I was > there. > > Best wishes, > > Nick > -- > Nick Dickens > DPhil BSc ARCS > > Bioinformatics Team Leader > Wellcome Trust Centre for Molecular Parasitology > B6-21 SGDB > 120 University Place > Glasgow > G12 8TA > > Tel: +44 141 330 8282 > > http://fb.me/WTCMPbix > @WTCMPbix > http://www.gla.ac.uk/researchinstitutes/iii/staff/nickdickens/ > > http://www.gla.ac.uk/researchinstitutes/iii/staff/jeremymottram/comparativegenomicsofleishmania/ > > From: Enis Afgan <enis.af...@irb.hr> > Date: Friday, 19 June 2015 17:00 > To: Nick Dickens <nick.dick...@glasgow.ac.uk> > Cc: "galaxy-dev@lists.galaxyproject.org" < > galaxy-dev@lists.galaxyproject.org> > Subject: Re: [spam?] [galaxy-dev] Cloudman cluster not starting workers > > Hi Nick, > Sorry to hear you're having trouble. I just tried a couple of scenarios > and they all worked as expected (e.g., with and without elastic IPs, > different instance types). > > The main CloudMan log is located in /mnt/cm/paster.log, on both master > and worker instances (if you didn't download the ssh key from cloudlaunch, > you can ssh with ubuntu username and the same password as provided on the > cloudlaunch form). The log is also available from the UI if you go to Admin > page and then click 'Show CloudMan log' under 'System controls'. If you can > share that, we can hopefully figure out what's going on. > > Best, > Enis > > On Wed, Jun 17, 2015 at 11:47 AM, Nicholas Dickens < > nick.dick...@glasgow.ac.uk> wrote: > >> Hi All, >> >> First time post, as a quick intro, I’m have some reasonable experience >> with EC2 & AWS for developing our own pipelines, I’m comfortable in python >> and *nix flavours and I am developing a completely custom galaxy in AWS for >> members of the WTCMP, Glasgow. In the meantime, I have thrown up a quick >> cloudman galaxy using the cloudstart and the cloudman 2.3 ami >> (ami-a7dbf6ce) in us-east-1. Auto–scaling didn’t seem to work so I’ve >> switched it off and added nodes manually, I tried various sizes including >> ‘same as master’ instances but they just don’t start – in the EC2 console I >> can see them and see them running. But they’re constantly pending in the >> /cloud interface and in the log they reboot 4 times and then terminate – >> apparently not responding "10:16:56 - Instance i-xxxxxx not responding >> after 4 reboots. Terminating instance". >> >> It’s out of the box, I editted the universe_wsgi.ini… file to disallow >> user registration and allow me to impersonate users but didn’t change >> anything else. The only other configuration I’ve done is associate an >> elastic IP with the master instance so I can have a more static url for a >> couple of test users (if I need to destroy it and start again, etc). >> >> I’m new to the system so don’t know which logs are best to check…and am >> I missing something obvious? It there a known bug when using elastic IPs? >> I’ve googled but with no joy. >> >> Thanks for your help and best wishes, >> >> Nick >> -- >> Nick Dickens >> DPhil BSc ARCS >> >> Bioinformatics Team Leader >> Wellcome Trust Centre for Molecular Parasitology >> B6-21 SGDB >> 120 University Place >> Glasgow >> G12 8TA >> >> Tel: +44 141 330 8282 >> >> http://fb.me/WTCMPbix >> @WTCMPbix >> http://www.gla.ac.uk/researchinstitutes/iii/staff/nickdickens/ >> >> http://www.gla.ac.uk/researchinstitutes/iii/staff/jeremymottram/comparativegenomicsofleishmania/ >> >> >> ----------------------------- Upozorenje ----------------------------- >> >> Automatskom detekcijom utvrdjeno je da tekst ove poruke >> podsjeca na tzv. phishing poruku. >> >> AKO SE U PORUCI TRAZI DA POSALJETE VASU IRB LOZINKU ILI >> DA UNESETE IRB PODATKE NA NAVEDENOM LINKU, RADI SE O >> NAPADU S CILJEM KRADJE I ZLOUPOTREBE PODATAKA. >> >> Centar za informatiku i racunarstvo, >> Institut Rudjer Boskovic >> >> ----------------------------- Upozorenje ----------------------------- >> >> ___________________________________________________________ >> Please keep all replies on the list by using "reply all" >> in your mail client. To manage your subscriptions to this >> and other Galaxy lists, please use the interface at: >> https://lists.galaxyproject.org/ >> >> To search Galaxy mailing lists use the unified search at: >> http://galaxyproject.org/search/mailinglists/ >> > >
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