Hi Carl,
Yes, the problem is fixed. Thank you very much. Just in
case, I see that galaxy-release-15.05 is now free of this
bug but galaxy-release-15.07 has this bug again.
Cheers,
Ata
On Wednesday 2015-07-15 07:54, Carl Eberhard wrote:
Date: Wed, 15 Jul 2015 07:54:05
From: Carl Eberhard <[email protected]>
To: Ata Roudgar <[email protected]>
Cc: Galaxy Dev List <[email protected]>,
Martin Siegert <[email protected]>, Matthew Laird <[email protected]>,
Franklin Bristow <[email protected]>
Subject: Re: [galaxy-dev] Possible bug on
"Create a collection of paired datasets"
Hi, Ata Roudgar
It is indeed a bug. Thank you very much for the excellent and *helpful* report!
We now have a fix for this on the release_15.05 branch of the github repository:
https://github.com/galaxyproject/galaxy/commit/13a40b3ef206f8662a49dfd06fbbc05b026f8c64
It should fix the issue but please let us know if it doesn't. Sorry for the
trouble.
On Fri, Jul 3, 2015 at 3:46 PM, Ata Roudgar <[email protected]> wrote:
Hi,
I am a computer cluster admin and I am trying to install galaxy on our
cluster. I used
galaxy-release_15.05 and because we need to serve Galaxy at a sub
directory, e.g.
irida-galaxy I modified the options prefix and cookie_path in the galaxy
configuration file
as follow:
prefix = /irida-galaxy
filter-with = proxy-prefix
cookie_path = /irida-galaxy
We use apache as an interface with the Following configuration:
<Proxy http://localhost:9010>
Order deny,allow
Allow from all
</Proxy>
RewriteRule ^/irida-galaxy$ /irida-galaxy/ [R]
RewriteRule ^/irida-galaxy/static/style/(.*)
/home/irida/galaxy-dist/static/june_2007_style/blue/$1 [L]
RewriteRule ^/irida-galaxy/static/scripts/(.*)
/home/irida/galaxy-dist/static/scripts/packed/$1 [L]
RewriteRule ^/irida-galaxy/static/(.*) /home/irida/galaxy-dist/static/$1
[L]
#RewriteRule ^/irida-galaxy/favicon.ico
/home/irida/galaxy-dist/static/favicon.ico [L]
RewriteRule ^/irida-galaxy/robots.txt
/home/irida/galaxy-dist/static/robots.txt [L]
RewriteRule ^/irida-galaxy(.*) http://localhost:9010$1 [P]
Everything works fairly good. Now I want to create a Dataset Pairs. first
I uploads some
fastaq files, e.g.,
a_1.fastaq
a_2.fastaq
b_1.fastaq
b_2.fastaq
c_1.fastaq
c_2.fastaq
then I choose: "Build List of Dataset Pairs" (See Fig-1 attached)
There is a window appears on my screen with the title: Create a collection
of paired
datasets. Now I am able to choose a name and save the paired collection.
However, once I
click on "Create list" buttons I receive a error message on top of the
windows:
"An error occurred While creating this collection: Not found
See Fig-2 attached. To be able to search the cause of error I turn on the
"Browser Consul"
on my web browser and notice that the error is related to the following
web form post:
https://newrobson.westgrid.ca:8444/api/histories/4936629215c25989/contents/dataset_collections
Which makes sense because such address do not exist. The address should be
https://newrobson.westgrid.ca:8444/irida-galaxy/api/histories/4936629215c25989/contents/dataset_collec
tions
So the prefix (irida-galaxy) is missing before
/api/histories...../dataset_collection
Is it a bug or am I missing something?
Please note that such error does not appear when I do not use prefix in my
galaxy
configration.
Thanks for your time,
Cheers,
Ata
----
Ata Roudgar
Research Computing
WestGrid Site
IT Services
Simon Fraser University
Burnaby, British Columbia
Canada V5A 1S6
phone: 778 782-8860
fax: 778 782-4242
___________________________________________________________
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----
Ata Roudgar
Research Computing
WestGrid Site
IT Services
Simon Fraser University
Burnaby, British Columbia
Canada V5A 1S6
phone: 778 782-8860
fax: 778 782-4242
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
https://lists.galaxyproject.org/
To search Galaxy mailing lists use the unified search at:
http://galaxyproject.org/search/mailinglists/
