I also thought of setting it up again from scratch...
@Marius I will check again the hg diff. The update with hg update worked
fine as far as I can see. So I'm not in a big hurry to change to git.
On 21.07.2015 13:27, Jelle Scholtalbers wrote:
> Hi Jochen,
> I recently took a probably more labour intensive approach.
> # backup!
> # mv prev-installation to somewhere else
> # git clone to old-location
> # git checkout -b master origin/master
> # and copy over every config, tool xml, tool dependency directory,
> tool-data loc files from the prev-installation to the new git one
> # add your own code changes if you have any that you want to keep
> # ./run.sh or manage_db.sh upgrade
> # check log and probably copy some more missing files
> The upside for me was that I could finally remove all the junk that our
> installation has been collecting for the last couple of year.
> On Tue, Jul 21, 2015 at 12:45 PM, Jochen Bick <jochen.b...@usys.ethz.ch>
>> Thanks Marius,
>> it does not look like it's working for me. There are to many changes in
>> git diff...
>> the git pull and cat local_changes.diff |patch -p1 -R gives me an
>> endless list of differences.
>> Cheers Jochen
>> On 21.07.2015 11:41, Marius van den Beek wrote:
>>> Hi Jochen,
>>> I recently did this. Instructions are here:
>>> This has worked for me:
>>> (~/galaxy-dist is my production galaxy dir)
>>> cd ~
>>> git clone https://github.com/galaxyproject/galaxy.git
>>> cd galaxy
>>> git reset --hard 3f1cec451f6dadee52a70a14fc6f6899f7aacdae
>>> cd ~/galaxy-dist
>>> hg update 17115
>>> mv .hg .hg_backup
>>> cp -R ~/galaxy/.git .
>>> git pull (at this point I got a merge error!)
>>> so I did:
>>> git diff > local_changes.diff
>>> cat local_changes.diff |patch -p1 -R
>>> git pull
>>> git checkout release_15.05
>>> On 21 July 2015 at 11:36, Jochen Bick <jochen.b...@usys.ethz.ch> wrote:
>>>> is it possible to change from bitbucket to git? So I would like
>>>> future-update my galaxy from git instead from bitbucket.
>>>> Cheers Jochen
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