Hi Peter v H, Which version of Galaxy are you running?
Which version of ncbi_blast_tools are you running? (ideally down to the ToolShed revision) My guess is that since this used to be .extra_files_path perhaps your Galaxy is too old for .files_path to work? https://github.com/peterjc/galaxy_blast/commit/2bbbf7f361ada20bf1b5bd777fae6e0cb52c4a38 Thanks, Peter C. On Tue, Jul 21, 2015 at 3:08 PM, Peter van Heusden <p...@sanbi.ac.za> wrote: > Hi there > > I'm trying to use the blastp tools from the ncbi_blast_tools, but every time > I try and run a job I get the following error: > > Traceback (most recent call last): > File > "/net/datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/runners/__init__.py", > line 163, in prepare_job > job_wrapper.prepare() > File > "/net/datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/jobs/__init__.py", > line 859, in prepare > self.command_line, self.extra_filenames, self.environment_variables = > tool_evaluator.build() > File > "/net/datasrv3hs.sanbi.ac.za/cip0/software/galaxy/galaxysrv/galaxy/lib/galaxy/tools/evaluation.py", > line 422, in build > raise e > NotFound: cannot find 'files_path' while searching for > 'db_opts.histdb.files_path' > > This is happening when expanding the tool template. The BLAST db in in the > history (thus the reference to histdb) but why can it not find this > attribute? > > Peter > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
