Hello,
I found this shed_tool_conf.xml (
https://raw.githubusercontent.com/galaxyproject/usegalaxy-playbook/c55aa042825fe02ef4a02d958eb811adba8ea45f/files/galaxy/usegalaxy.org/var/shed_tool_conf.xm)
file on use galaxy-playbook. I copied information for snpSift_filter out of
the xml file and pasted it to the command below:

   * $ python
/Users/lorencm/galaxy/scripts/api/install_tool_shed_repositories.py -a
4bb8f6eb85efca463d2e60b9704d6caf -l http://localhost:8080
<http://localhost:8080>  -n snpSift_filter -o pcingola -r c052639fa666
--panel-section-name 'snpEff' --repository-deps --tool-deps -u
http://toolshed.g2.bx.psu.edu/ <http://toolshed.g2.bx.psu.edu/>*

However, I received the following error massage:

   * HTTP Error 400: Bad Request*
*    {"traceback": "Traceback (most recent call last):\n  File
\"/Users/lorencm/galaxy/lib/galaxy/web/framework/decorators.py\", line 251,
in decorator\n    rval = func( self, trans, *args, **kwargs)\n  File
\"/Users/lorencm/galaxy/lib/galaxy/webapps/galaxy/api/tool_shed_repositories.py\",
line 246, in install_repository_revision\n    payload )\n  File
\"/Users/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py\",
line 704, in install\n    changeset_revision )\n  File
\"/Users/lorencm/galaxy/lib/tool_shed/galaxy_install/install_manager.py\",
line 505, in __get_install_info_from_tool_shed\n    raise
exceptions.RequestParameterInvalidException( invalid_parameter_message
)\nRequestParameterInvalidException: No information is available for the
requested repository revision.\nOne or more of the following parameter
values is likely invalid:\ntool_shed_url:
http://toolshed.g2.bx.psu.edu/\nname
<http://toolshed.g2.bx.psu.edu/\nname>: snpSift_filter\nowner:
pcingola\nchangeset_revision: c052639fa666\n\n", "err_msg": "No information
is available for *

I also posted it on Github (
https://github.com/galaxyproject/usegalaxy-playbook/issues/8)

How is it possible to fix the problem?

Thank you in advance.

Mic
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to