Hello,

 

My name is olivier, I am a PhD student in biology.

I have to run bioinformatical prediction on protein sequences and i chose
galaxy to do it.

I have some basic skills with linux, and I may have missed some steps.

 

My galaxy server is running for more than one week now; the installation was
ok, but I am facing some problems to install some dependencies:

 

-          Samtools 0.1.18 returns errors everytime I try to install it:

“this tool dependency’s required tool dependency samtools version 0.1.18 has
status error”

“In file included from bgzf.c:32:0: bgzf.h:33:18: fatal error: zlib.h: No
such file or directory #include <zlib.h> ^ compilation terminated. make[2]:
*** [bgzf.o] Error 1 make[1]: *** [lib-recur] Error 1 make: *** [all-recur]
Error 1”

-          Atlas 3.10.2 2 won’t install correctly neither : ” mkdir: cannot
create directory ‘ATLAS/build’: No such file or directory”

-          Same goes for Numpy 1.7.1, samtools 1.2, tophat 1.4.0, rsem
1.1.17

 

Do you have any idea? Or tips?

 

Thank you and have a nice day,

 

M Olivier CLAUDE- PhD Student

INSERM/UPMC UMRS ICAN 1166 – Equipe 2

Faculté de médecine Pitié-Salpêtrière

91, bld de l'Hôpital - 3ème étage - Porte 305

75013 Paris - FRANCE

 

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to