Dear Galaxy Dev Team,

We upgraded our Galaxy instance to the git repository from mercurial  old 
Galaxy-dist to Galaxy.  
When running the sh manage_db.sh -c ./config/galaxy.ini  upgrade   we get the 
following error.

Can you explain this error and more importantly how to correct the problem>

Thanks,
Bob

-bash-4.2$ sh manage_db.sh -c ./config/galaxy.ini upgradeTraceback (most recent 
call last):  File "./scripts/manage_db.py", line 33, in <module>    
invoke_migrate_main()  File "./scripts/manage_db.py", line 30, in 
invoke_migrate_main    main( repository=repo, url=db_url )  File 
"/shelter/rppa/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.7.egg/migrate/versioning/shell.py",
 line 209, in main    ret = command_func(**kwargs)  File 
"/shelter/rppa/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.7.egg/migrate/versioning/api.py",
 line 186, in upgrade    return _migrate(url, repository, version, 
upgrade=True, err=err, **opts)  File "<string>", line 2, in _migrate  File 
"/shelter/rppa/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.7.egg/migrate/versioning/util/__init__.py",
 line 160, in with_engine    return f(*a, **kw)  File 
"/shelter/rppa/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.7.egg/migrate/versioning/api.py",
 line 342, in _migrate    schema = ControlledSchema(engine, repository)  File 
"/shelter/rppa/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.7.egg/migrate/versioning/schema.py",
 line 33, in __init__    self.load()  File 
"/shelter/rppa/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.7.egg/migrate/versioning/schema.py",
 line 54, in load    exceptions.DatabaseNotControlledError(str(exc)), tb)  File 
"/shelter/rppa/galaxy/eggs/sqlalchemy_migrate-0.9.6-py2.7.egg/migrate/versioning/schema.py",
 line 50, in load    data = 
list(result)[0]migrate.exceptions.DatabaseNotControlledError: list index out of 
range-bash-4.2$ 

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