Hello,
I tried to install CEAS from testtoolshed, but I have recieved the below
error from python_mysqldb
(tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f)

The installation directory for this tool dependency had contents but the
database had no record. The installation log may show this tool dependency
to be correctly installed, but due to the missing database record it is now
being set to Error.

I installed MariaDB 10.1 on Ubuntu 14.04 in the following way:

apt-key adv --recv-keys --keyserver hkp://keyserver.ubuntu.com:80
0xcbcb082a1bb943db
add-apt-repository 'deb [arch=amd64,i386]
http://mirror.aarnet.edu.au/pub/MariaDB/repo/10.1/ubuntu trusty main'
apt-get update
apt-get install mariadb-server libmariadbclient-dev

The INSTALLATION.log shows the following information:
...
byte-compiling build/bdist.linux-x86_64/egg/MySQLdb/cursors.py to
cursors.pyc
creating stub loader for _mysql.so
byte-compiling build/bdist.linux-x86_64/egg/_mysql.py to _mysql.pyc
creating build/bdist.linux-x86_64/egg/EGG-INFO
copying MySQL_python.egg-info/SOURCES.txt ->
build/bdist.linux-x86_64/egg/EGG-INFO
copying MySQL_python.egg-info/dependency_links.txt ->
build/bdist.linux-x86_64/egg/EGG-INFO
copying MySQL_python.egg-info/top_level.txt ->
build/bdist.linux-x86_64/egg/EGG-INFO
writing build/bdist.linux-x86_64/egg/EGG-INFO/native_libs.txt
creating dist
removing 'build/bdist.linux-x86_64/egg' (and everything under it)
Creating
/home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python/site.py
Processing MySQL_python-1.2.5-py2.7-linux-x86_64.egg
Copying MySQL_python-1.2.5-py2.7-linux-x86_64.egg to
/home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python
Adding MySQL-python 1.2.5 to easy-install.pth file

Installed
/home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python/MySQL_python-1.2.5-py2.7-linux-x86_64.egg
Processing dependencies for MySQL-python==1.2.5
Finished processing dependencies for MySQL-python==1.2.5
#############################################

#############################################

     export
PYTHONPATH=$PYTHONPATH:/home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python
&&
     python setup.py install --install-lib
/home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/lib/python
--install-scripts
/home/lorencm/galaxy/tool_dependency/python_mysqldb/1.2.5/pjbriggs/ceas/82df5af2995f/bin

STDERR
zip_safe flag not set; analyzing archive contents...

What did I miss?

Thank you in advance.

Mic
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to