Hi Bjoern,
Yes, I do:

> java -version
java version "1.7.0_85"
OpenJDK Runtime Environment (IcedTea 2.6.1) (7u85-2.6.1-5ubuntu0.14.04.1)
OpenJDK 64-Bit Server VM (build 24.85-b03, mixed mode)

Can it be related that my API key has change while migrating to Postgresql?
I tried to put it back the old one in *galaxy.ini*, but Galaxy does not
pick it from *master_api_key*.

Thank you in advance.

Mic



On Tue, Nov 17, 2015 at 12:28 PM, Björn Grüning <bjoern.gruen...@gmail.com>
wrote:

> Hi Mic,
>
> do you have Java installed?
>
> cheers,
> Bjoern
>
> Am 17.11.2015 um 02:05 schrieb Mic:
> > Hello,
> > I installed FastQC (~/shed_tools/toolshed.g2.bx.psu.edu/repos/*devteam*
> > /fastqc/*2d094334f61e*/
> >
> > *FastQC ).*
> > However, I got the following error while running it:
> >
> >
> > *Fatal error: Exit code 1 () Traceback (most recent call last): File
> > "/home/lorencm/shed_tools/
> toolshed.g2.bx.psu.edu/repos/devteam/fastqc/2d094334f61e/fastqc/rgFastQC.py
> > <
> http://toolshed.g2.bx.psu.edu/repos/devteam/fastqc/2d094334f61e/fastqc/rgFastQC.py
> >",
> > line 157, in <module> assert
> os.path.isfile(opts.executable),'##rgFastQC.py
> > error - cannot find executable %s' % opts.executable AssertionError:
> > ##rgFastQC.py error - cannot find executable /fastqc*
> >
> > The Fastqc package seems to be correctly installed:
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> >
> *~/galaxy/tool_dependency/FastQC/0.11.2/devteam/package_fastqc_0_11_2/4b65f6e39cb0
> >> ls -1 -ahltotal 824Kdrwxrwxr-x 8 lorencm lorencm 4.0K Nov  4 02:21
> > .drwxrwxr-x 3 lorencm lorencm 4.0K Nov  4 02:21 ..drwxrwxr-x 2 lorencm
> > lorencm 4.0K Nov  4 02:21 Configuration-rwxrwxr-x 1 lorencm lorencm  251
> > Nov  4 02:21 env.sh-rwxr-xr-x 1 lorencm lorencm  13K Nov  4 02:21
> > fastqc-rw-rw-r-- 1 lorencm lorencm 2.2K Nov  4 02:21
> > fastqc_icon.icodrwxrwxr-x 5 lorencm lorencm 4.0K Nov  4 02:21
> > Help-rw-rw-r-- 1 lorencm lorencm 5.5K Nov  4 02:21 INSTALL.txt-rw-rw-r--
> 1
> > lorencm lorencm  49K Nov  4 02:21 jbzip2-0.9.jar-rw-rw-r-- 1 lorencm
> > lorencm  35K Nov  4 02:21 LICENSE.txtdrwxrwxr-x 3 lorencm lorencm 4.0K
> Nov
> > 4 02:21 netdrwxrwxr-x 3 lorencm lorencm 4.0K Nov  4 02:21 org-rw-rw-r-- 1
> > lorencm lorencm 2.1K Nov  4 02:21 README.txt-rw-rw-r-- 1 lorencm lorencm
> > 32K Nov  4 02:21 RELEASE_NOTES.txt-rw-rw-r-- 1 lorencm lorencm  101 Nov
> 4
> > 02:21 run_fastqc.bat-rw-rw-r-- 1 lorencm lorencm 630K Nov  4 02:21
> > sam-1.103.jardrwxrwxr-x 3 lorencm lorencm 4.0K Nov  4 02:21
> > Templatesdrwxrwxr-x 3 lorencm lorencm 4.0K Nov  4 02:21 uk*
> > What do I miss out?
> >
> > Thank you in advance.
> >
> > Mic
> >
> >
> >
> > ___________________________________________________________
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>
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