Hi Ulf,

you most probably want your tool to depend on package_python_2_7_10 from
the iuc (it will ensure your tool has access to 2.7.10 no matter what
python the Galaxy executing your tool is using)

The package is being developed here
https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_python_2_7_10
and
is available at the MTS here
https://toolshed.g2.bx.psu.edu/view/iuc/package_python_2_7_10/73631e818d3d

You will need to add to your wrapper's xml something like:

<requirements>
<requirement type="package" version="2.7.10">python</requirement>
</requirements>

And you have to include tool_dependencies.xml file which will look
something like:

<?xml version="1.0"?>
<tool_dependency>
<package name="python" version="2.7.10">
<repository name="package_python_2_7_10" owner="iuc"
prior_installation_required="True" />
</package>
</tool_dependency>

Please let me know if you have more questions.

M.

On Tue, Dec 1, 2015 at 10:54 AM Ulf Schaefer <ulf.schae...@phe.gov.uk>
wrote:

> Dear all
>
> I have a Python script that I would like to publish to the tool shed. It
> has a couple dependencies, all Python modules (argparse, PyVCF, PyYAML).
> It also needs a Python version 2.7<=X<3, which is not available per
> default everywhere.
>
> Firstly, how do I specify these dependencies in the tool <requirements>
> tag?
>
> And secondly, once I have a correct set of tool definition files with
> tests and test data, how do I best get it onto the tool shed?
>
> I had a look through the wiki and the planemo documentation.
> Unfortunately how to handle these dependencies did not become
> immediately obvious (to me).
>
> Thanks for any pointers and sorry if this has been answered some place I
> did not look.
>
> Cheers
> Ulf
>
> --
> Ulf Schaefer, PhD
> Bioinformatics Scientist
> Bioinformatics Unit - Infectious Disease Informatics
> National Infection Service
> Public Health England
> 61 Colindale Ave, London NW9 5EQ
> ulf.schae...@phe.gov.uk
> http://www.gov.uk/phe
> Protecting and improving the nation’s health
>
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