I just tried to install khmer from the toolshed.
I don’t think it’s installing correctly  - but I don’t know if it’s a tool 
problem or something with my setup.

the tool-dep directory has
but it’s empty.

This tool has a package dependency like this:

<?xml version="1.0"?>
    <package name="khmer" version="2.0">
        <install version="1.0">
    <action type="setup_python_environment">
    <repository changeset_revision="5caf592bb259" name="package_python_2_7" 
owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu";>
<package name="python" version="2.7" />

what does that fragment tag mean?
How does this work.
Do I have to set up something to deal with making a python environment?

It also uses this @BINARY@ variable that I have not seen before. galaxy search 
for ‘@BINARY@‘ turns up nothing.
Can anybody point me in the right direction here?



Brad Langhorst, Ph.D.
Development Scientist
New England Biolabs

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