Hi All

I have enabled job metrics on a local galaxy install, with latest code from
dev branch. I have "<collectl /> " uncommented in job_metrics_conf.xml file:

Following are the errors in the logs:

galaxy.jobs.metrics ERROR 2016-02-24 12:28:08,741 Failed to collect job
properties for plugin
<galaxy.jobs.metrics.instrumenters.collectl.CollectlPlugin object at
0x7ff0b6af3a50>
Traceback (most recent call last):
  File "dev/galaxy/lib/galaxy/jobs/metrics/__init__.py", line 101, in
collect_properties
    properties = plugin.job_properties( job_id, job_directory )
  File "dev/galaxy/lib/galaxy/jobs/metrics/instrumenters/collectl.py", line
105, in job_properties
    raise Exception( message )
Exception: Failed to find collectl log in directory

It seems like collectl is looking for the following files:

['__instrument_collectl_pid', '__instrument_env_vars', 'galaxy.json',
'metadata_kwds_HistoryDatasetAssociation_2_1rh1WC',
'set_metadata_N05Q24.py', '__instrument_core_galaxy_slots',
'metadata_results_HistoryDatasetAssociation_2_33gTDj',
'__instrument_core_epoch_start', 'galaxy_2.sh',
'metadata_out_HistoryDatasetAssociation_2_G5bZYP',
'__instrument_core_epoch_end', '__instrument_meminfo_meminfo',
'__instrument_uname_uname',
'metadata_override_HistoryDatasetAssociation_2_krldDM',
'set_metadata_lpIXS5.py', 'metadata_in_HistoryDatasetAssociation_2_iiYW0t',
'__instrument_cpuinfo_cpuinfo', 'tool_script.sh', 'galaxy_2.ec']

Which are suppose to exist under galaxy/database/job_working_directory/000
job directory.

Has anybody faced anything similar issue or is it a configuration issue, or
perhaps a known issue with job_metrics (collectl)?

BTW: I installed collectl packages on the host.

Regards
Zipho
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