On Thu, Feb 25, 2016 at 2:49 AM, Makis Ladoukakis <makis4e...@hotmail.com>
wrote:

> Just upgraded from the last version and after I run the run.sh script I
> get the following error:
>
> mysql_config: command not found
>     Traceback (most recent call last):
>       File "<string>", line 1, in <module>
>       File "/tmp/pip-build-xd3cnM/MySQL-python/setup.py", line 17, in
> <module>
>         metadata, options = get_config()
>       File "setup_posix.py", line 43, in get_config
>         libs = mysql_config("libs_r")
>       File "setup_posix.py", line 25, in mysql_config
>         raise EnvironmentError("%s not found" % (mysql_config.path,))
>     EnvironmentError: mysql_config not found
>
>
>
> Any idea why?
>
> I am running on CentOS 7.1.1503  with MariaDB installed.
>

Hi Makis,

Please make sure that you have the -devel package for MariaDB installed.
MySQL_Python is looking for the `mysql_config` command to be able to build,
but it's not present on your system.

--nate


>
>
> Kind regards,
> Makis
>
> ------------------------------
> From: n...@bx.psu.edu
> Date: Wed, 24 Feb 2016 16:56:19 -0500
> To: galaxy-annou...@lists.galaxyproject.org;
> galaxy-dev@lists.galaxyproject.org
> CC: galaxy-committ...@lists.galaxyproject.org
> Subject: [galaxy-dev] Galaxy 16.01 Release
>
>
> The Galaxy Committers team is pleased to announce the January 2016
> (v16.01) release of Galaxy. Galaxy administrators should also be aware of
> the security announcements that I am posting simultaneously with this
> release announcement. The release notes follow.
>
>
> From:
> https://docs.galaxyproject.org/en/master/releases/16.01_announce.html
>
>
> January 2016 Galaxy Release (v 16.01)
>
> Highlights
>
> *Interactive Tours*
>
> The interactive tours framework allows developers and deployers to build
> interactive tutorials for users superimposed on the actual Galaxy web front
> end. Unlike video tutorials, these will not become stale and are truly
> interactive (allowing users to actually navigate and interact with Galaxy).
> Galaxy 16.01 ships with two example tours and new ones can easily be added
> by creating a small YAML file describing the tour. Try the Galaxy UI tour
> on Main.
>
> *Wheels*
>
> Galaxy’s Python dependencies have traditionally been distributed as eggs
> using custom dependency management code to enable Galaxy to distribute
> binary dependencies (enabling quick downloads and minimal system
> requirements). With this release all of that infrastructure has been
> replaced with a modern Python infrastructure based on pip and wheels. Work
> done as part of this to enable binary dependencies on Linux has been
> included with the recently released pip 8.
>
> Detailed documentation on these changes and their impact under a variety
> of Galaxy deployment scenarios can be found in the Galaxy Framework
> Dependencies section of the Admin documentation.
>
> *Nested Workflows*
>
> Workflows may now run other workflows as a single abstract step in the
> parent workflow. This allows for reusing or subworkflows in your analyses.
>
> Github
>
> *New*
> % git clone -b master https://github.com/galaxyproject/galaxy.git
> *Update to latest stable release*
> % git checkout master && pull --ff-only origin master
> *Update to exact version*
> % git checkout v16.01
>
> BitBucket
>
> *Upgrade*
> % hg pull
> % hg update latest_16.01
>
> See our wiki for additional details regarding the source code locations.
>
> Deprecation Notices
>
> Barring a strong outcry from deployers, 16.01 will be the last release of
> Galaxy to support Python 2.6. For more information, see Galaxy Github Issue
> #1596.
>
> ___________________________________________________________ Please keep
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>
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