Thanks a lot Nate! You are right!
yum install mariadb-devel
did the trick.
Cheers,
Makis
From: n...@bx.psu.edu
Date: Thu, 25 Feb 2016 10:12:51 -0500
Subject: Re: [galaxy-dev] Galaxy 16.01 Release
To: makis4e...@hotmail.com
CC: galaxy-dev@lists.galaxyproject.org
On Thu, Feb 25, 2016 at 2:49 AM, Makis Ladoukakis <makis4e...@hotmail.com>
wrote:
Just upgraded from the last version and after I run the run.sh script I get the
following error:
mysql_config: command not found
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-xd3cnM/MySQL-python/setup.py", line 17, in <module>
metadata, options = get_config()
File "setup_posix.py", line 43, in get_config
libs = mysql_config("libs_r")
File "setup_posix.py", line 25, in mysql_config
raise EnvironmentError("%s not found" % (mysql_config.path,))
EnvironmentError: mysql_config not found
Any idea why?
I am running on CentOS 7.1.1503 with MariaDB installed.
Hi Makis,
Please make sure that you have the -devel package for MariaDB installed.
MySQL_Python is looking for the `mysql_config` command to be able to build, but
it's not present on your system.
--nate
Kind regards,
Makis
From: n...@bx.psu.edu
Date: Wed, 24 Feb 2016 16:56:19 -0500
To: galaxy-annou...@lists.galaxyproject.org; galaxy-dev@lists.galaxyproject.org
CC: galaxy-committ...@lists.galaxyproject.org
Subject: [galaxy-dev] Galaxy 16.01 Release
The Galaxy Committers team is pleased to announce the January 2016 (v16.01)
release of Galaxy. Galaxy administrators should also be aware of the security
announcements that I am posting simultaneously with this release announcement.
The release notes follow.
From: https://docs.galaxyproject.org/en/master/releases/16.01_announce.html
January 2016 Galaxy Release (v 16.01)
Highlights
Interactive Tours
The interactive tours framework allows developers and deployers to build
interactive tutorials for users superimposed on the actual Galaxy web front
end. Unlike video tutorials, these will not become stale and are truly
interactive (allowing users to actually navigate and interact with Galaxy).
Galaxy 16.01 ships with two example tours and new ones can easily be added by
creating a small YAML file describing the tour. Try the Galaxy UI tour on Main.
Wheels
Galaxy’s Python dependencies have traditionally been distributed as eggs using
custom dependency management code to enable Galaxy to distribute binary
dependencies (enabling quick downloads and minimal system requirements). With
this release all of that infrastructure has been replaced with a modern Python
infrastructure based on pip and wheels. Work done as part of this to enable
binary dependencies on Linux has been included with the recently released pip 8.
Detailed documentation on these changes and their impact under a variety of
Galaxy deployment scenarios can be found in the Galaxy Framework Dependencies
section of the Admin documentation.
Nested Workflows
Workflows may now run other workflows as a single abstract step in the parent
workflow. This allows for reusing or subworkflows in your analyses.
Github
New% git clone -b master https://github.com/galaxyproject/galaxy.gitUpdate to
latest stable release% git checkout master && pull --ff-only origin
masterUpdate to exact version% git checkout v16.01
BitBucket
Upgrade% hg pull% hg update latest_16.01
See our wiki for additional details regarding the source code locations.
Deprecation Notices
Barring a strong outcry from deployers, 16.01 will be the last release of
Galaxy to support Python 2.6. For more information, see Galaxy Github Issue
#1596.
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___________________________________________________________
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