The vision I had was a cron script admins could install which would send
thr past day/week's collectl/memory/parameter/dataset size logs to GRT.
Again, the GRT side stalled when I hit issues with collectl locally. If you
have time/energy to work on that we should chat :-) Otherwise I plan to
find time for it before GCC, minus the collectl stuff, just capturing
runtimes as a start.
14. mar. 2016 1.09 p.m. skrev "Peter van Heusden" <p...@sanbi.ac.za>:
> Hi Eric
> I'm having a look at the GRT. We're collecting metrics on our local Galaxy
> server, I'm just trying to understand how you envision these metrics
> getting into the GRT?
> On 22 February 2016 at 07:31, Eric Rasche <e...@tamu.edu> wrote:
>> Hi peter,
>> I've been working on this in the past but got caught up in other
>> projects. There's work for a server-side component here (maybe 50% done),
>> the client side stuff could all be done through collectl but I was having
>> issues actually collecting collectl data that had put the project on hold
>> I'd be very, very interested in finishing this project up.
>> On 02/21/2016 11:13 PM, Peter van Heusden wrote:
>> Hi there
>> We're researching the resource (CPU time and memory) requirements for RNA
>> STAR at the moment. Specifically, we'd like to build up a database of input
>> size to resource usage so that we can use this to feed a dynamic
>> destination mapper (currently our STAR configuration uses a thumbsuck for
>> RAM and CPU requirements that is not optimal but works in many cases).
>> Has anyone collected these metrics before? And more generally, is anyone
>> collecting metrics for a range of bioinformatics tools? A database like
>> this could be very useful!
>> Please keep all replies on the list by using "reply all"
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>> Eric Rasche
>> Programmer II
>> Center for Phage Technology
>> Rm 312A, BioBio
>> Texas A&M University
>> College Station, TX 77843
>> Not responding quickly enough?
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