Hello, I have connected my galaxy to a Slurm cluster via DRMAA. Galaxy can send jobs to the cluster without problems. But then I configure galaxy to use “real users” I got this error:
"User myu...@mydomain.es<mailto:myu...@mydomain.es> is not mapped to any real user, and not permitted to start jobs” Could you help me? Tanks!! This is my job_con.xml: <?xml version="1.0"?> <job_conf> <plugins workers="6"> <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner" workers="2"> <param id="drmaa_library_path">/opt/slurm-drmaa/lib/libdrmaa.so</param> </plugin> </plugins> <handlers default="handlers"> <handler id="main" tags="handlers"/> </handlers> <destinations default="drmaa"> <destination id="drmaa" runner="drmaa"> <param id="galaxy_external_runjob_script">/opt/galaxy/scripts/drmaa_external_runner.py</param> <param id="galaxy_external_killjob_script">/opt/galaxy/scripts/drmaa_external_killer.py</param> <param id="galaxy_external_chown_script">/opt/galaxy/scripts/external_chown_script.py</param> </destination> </destinations> </job_conf> this is my auth_conf.xml: <?xml version="1.0"?> <auth> <authenticator> <type>ldap</type> <options> <auto-register>True</auto-register> <allow-password-change>False</allow-password-change> <server>ldap://ldap.ceta-ciemat.es</server> <login-use-username>True</login-use-username> <continue-on-failure>False</continue-on-failure> <search-filter>(|(mail={email})(uid={username}))</search-filter> <search-fields>uid,mail,dn</search-fields> <search-base>ou=xxxxxx,dc=xxxxx,dc=xxxxx</search-base> <bind-user>{dn}</bind-user> <bind-password>{password}</bind-password> <auto-register-username>{uid}</auto-register-username> <auto-register-email>{mail}</auto-register-email> <login-use-username>True</login-use-username> </options> </authenticator> <authenticator> <type>localdb</type> <options> <!-- Whether users are allowed to change their password. Default is False. --> <allow-password-change>true</allow-password-change> </options> </authenticator> </auth> And this is my galaxy.ini: [server:main] port = 8080 host = 0.0.0.0 use_threadpool = True threadpool_kill_thread_limit = 10800 [filter:gzip] [filter:proxy-prefix] prefix = /galaxy [app:main] paste.app_factory = galaxy.web.buildapp:app_factory database_connection = postgres://xxxxxxxx:xxxxxx@xxxxx/galaxy_project database_engine_option_server_side_cursors = True database_engine_option_strategy = threadlocal new_file_path = database/tmp tool_config_file = config/tool_conf.xml,config/shed_tool_conf.xml tool_dependency_dir = dependency_dir cluster_files_directory = database/pbs smtp_server = localhost use_nglims = False nglims_config_file = tool-data/nglims.yaml debug = true use_interactive = True require_login = True allow_user_creation = False allow_user_deletion = True allow_user_impersonation = True allow_user_dataset_purge = True new_user_dataset_access_role_default_private = True auth_config_file = config/auth_conf.xml enable_quotas = True expose_dataset_path = False job_config_file = config/job_conf.xml enable_job_recovery = True outputs_to_working_directory = True drmaa_external_runjob_script = scripts/drmaa_external_runner.py drmaa_external_killjob_script = scripts/drmaa_external_killer.py external_chown_script = scripts/external_chown_script.py ---------------------------- Confidencialidad: Este mensaje y sus ficheros adjuntos se dirige exclusivamente a su destinatario y puede contener informaci�n privilegiada o confidencial. Si no es vd. el destinatario indicado, queda notificado de que la utilizaci�n, divulgaci�n y/o copia sin autorizaci�n est� prohibida en virtud de la legislaci�n vigente. Si ha recibido este mensaje por error, le rogamos que nos lo comunique inmediatamente respondiendo al mensaje y proceda a su destrucci�n. Disclaimer: This message and its attached files is intended exclusively for its recipients and may contain confidential information. If you received this e-mail in error you are hereby notified that any dissemination, copy or disclosure of this communication is strictly prohibited and may be unlawful. In this case, please notify us by a reply and delete this email and its contents immediately. ----------------------------
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