Dear Galaxy Team,

I'm trying to install the repeatexplorer tool
https://bitbucket.org/repeatexplorer/

I get the following message that I cannot solve. it does not seem to be 
releated to the repeatexplorer tool itself since it is not using MPI as far as 
I can tell although it does not seem to happen with other tools at the galaxy 
instance.

ERROR: ld.so: object '/usr/lib/openmpi/lib/libmpi.so' from LD_PRELOAD cannot be 
preloaded (wrong ELF class: ELFCLASS64): ignored.

note: /usr/lib/openmpi/lib/libmpi.so exists and is a 64 bits lib

I've tried unsetting the LD_PRELOAD library for the galaxy user but that did 
not help,.
According to the logs it looks like this error occurs after the job finishes.

I would appreciate any clues on how to debug this and to find out where this 
message comes from.

below the snippet from the logfiles:

galaxy.jobs DEBUG 2016-04-04 11:22:40,544 (1829) Working directory for job is: 
/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829
galaxy.jobs.handler DEBUG 2016-04-04 11:22:40,556 (1829) Dispatching to drmaa 
runner
galaxy.jobs DEBUG 2016-04-04 11:22:40,760 (1829) Persisting job destination 
(destination id: sge_default)
galaxy.jobs.runners DEBUG 2016-04-04 11:22:40,765 Job [1829] queued (207.994 ms)
galaxy.jobs.handler INFO 2016-04-04 11:22:40,808 (1829) Job dispatched
galaxy.jobs.runners DEBUG 2016-04-04 11:22:41,841 (1829) command is: bash 
/mnt/data/home/NIOO/galaxy/galaxy-dist/tools/umbr_programs/seqclust/seqclust-main.sh
 -s /mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3137.dat 
-m 0.01 -o 40 -d Viridiplantae -v 
/mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3173.dat -w 
/mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3174.dat -y 
/mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3175.dat -z 
RMSKtable -r /mnt/data/home/NIOO/galaxy/galaxy-dist -t 
/mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3176.dat -u 
'/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/dataset_3176_files'
 -p false -f 0 -a True -l 55 -x " " -K 10; return_code=$?; python 
"/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/set_metadata_VcdaXP.py"
 "/tmp/tmpOOJhc4" 
"/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/galaxy.json"
 
"/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_in_HistoryDatasetAssociation_2937_ivd_QV,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_kwds_HistoryDatasetAssociation_2937__9U8lt,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_out_HistoryDatasetAssociation_2937_zmXF2T,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_results_HistoryDatasetAssociation_2937_XHZd2p,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3176.dat,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_override_HistoryDatasetAssociation_2937_0_rQHI"
 
"/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_in_HistoryDatasetAssociation_2936_2FIF61,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_kwds_HistoryDatasetAssociation_2936__PZplz,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_out_HistoryDatasetAssociation_2936_ImcuR2,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_results_HistoryDatasetAssociation_2936_Jm3zxC,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3175.dat,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_override_HistoryDatasetAssociation_2936_qkgfR7"
 
"/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_in_HistoryDatasetAssociation_2935_5Ozbvu,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_kwds_HistoryDatasetAssociation_2935_H_7TWw,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_out_HistoryDatasetAssociation_2935_Rp42fp,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_results_HistoryDatasetAssociation_2935_ycng_Q,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3174.dat,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_override_HistoryDatasetAssociation_2935_gbk6Im"
 
"/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_in_HistoryDatasetAssociation_2934_wM1GtU,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_kwds_HistoryDatasetAssociation_2934_pUrJqr,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_out_HistoryDatasetAssociation_2934__8Jvh6,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_results_HistoryDatasetAssociation_2934_n_AZt2,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/files/003/dataset_3173.dat,/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/metadata_override_HistoryDatasetAssociation_2934_ovKSAZ"
 5242880; sh -c "exit $return_code"
galaxy.jobs.runners.drmaa DEBUG 2016-04-04 11:22:41,890 (1829) submitting file 
/mnt/data/home/NIOO/galaxy/galaxy-dist/database/job_working_directory/001/1829/galaxy_1829.sh
galaxy.jobs.runners.drmaa INFO 2016-04-04 11:22:41,900 (1829) queued as 9507
galaxy.jobs DEBUG 2016-04-04 11:22:41,950 (1829) Persisting job destination 
(destination id: sge_default)
galaxy.jobs.runners.drmaa DEBUG 2016-04-04 11:22:42,159 (1829/9507) state 
change: job is queued and active
galaxy.jobs.runners.drmaa DEBUG 2016-04-04 11:22:44,286 (1829/9507) state 
change: job is running
galaxy.jobs.runners.drmaa DEBUG 2016-04-04 11:47:59,005 (1829/9507) state 
change: job finished normally
galaxy.jobs DEBUG 2016-04-04 11:47:59,500 setting dataset state to ERROR
galaxy.jobs DEBUG 2016-04-04 11:47:59,527 setting dataset state to ERROR
galaxy.jobs DEBUG 2016-04-04 11:47:59,559 setting dataset state to ERROR
galaxy.jobs DEBUG 2016-04-04 11:47:59,602 setting dataset state to ERROR
galaxy.jobs INFO 2016-04-04 11:47:59,779 Collecting job metrics for 
<galaxy.model.Job object at 0x7f3f346d89d0>
galaxy.jobs DEBUG 2016-04-04 11:47:59,798 job 1829 ended (finish() executed in 
(595.557 ms))


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