I’ll give it a shot.
Thanks for the tip.

brad
—
Brad Langhorst, Ph.D.
Development Scientist
New England Biolabs




On Apr 29, 2016, at 12:48 PM, Christian Brenninkmeijer 
<christian.brenninkmei...@manchester.ac.uk<mailto:christian.brenninkmei...@manchester.ac.uk>>
 wrote:

Have a look at:
https://github.com/galaxyproject/galaxy/blob/master/lib/galaxy/tools/deps/resolvers/unlinked_tool_shed_packages.py

This will attempt to find any dependencies previously install from a toolshed 
to use in Planemo.

Christian

PS.
If your package is not exactly named you may have to comment out the condition
if package_name.lower().startswith("package_" + name.lower()):



________________________________
From: galaxy-dev 
[galaxy-dev-boun...@lists.galaxyproject.org<mailto:galaxy-dev-boun...@lists.galaxyproject.org>]
 on behalf of Langhorst, Brad [langho...@neb.com<mailto:langho...@neb.com>]
Sent: Friday, April 29, 2016 5:30 PM
To: Anthony Bretaudeau
Cc: 
galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>
Subject: Re: [galaxy-dev] Kallisto tool wrapper?

Salmon works in a similar way to kallisto.
I’ve been tweaking the test toolshed wrapper of that lately, but I have not yet 
figured out how to get planemo to test it properly - as soon as I do i’ll 
publish it to the toolshed.


Brad
—
Brad Langhorst, Ph.D.
Development Scientist
New England Biolabs




On Apr 29, 2016, at 11:07 AM, Anthony Bretaudeau 
<anthony.bretaud...@inria.fr<mailto:anthony.bretaud...@inria.fr>> wrote:

Hi,

While working on Trinity, I made a package (but no wrapper) for it in IUC: 
https://github.com/galaxyproject/tools-iuc/pull/613

It is not yet merged because of a licence problem though...


On 29/04/2016 16:37, Lance Parsons wrote:
I've had requests from users to install Kallisto as Galaxy tool. I didn't see 
any wrappers or evidence of wrappers in my searching, but I thought I'd ask 
here to see if anyone is working on or interested in working on such a thing.


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