Resending because I forgot to reply-all:
Older versions of Planemo should just respect an 'export
TMPDIR="/new/tmp"' before calling planemo. I think recently we
introduced a work around for some conda problems
(https://github.com/galaxyproject/planemo/pull/460) that causes this
not to be respected if the tmp directory is too long - there should be
a way to manually configure Planemo's tempdir but there is not at this
On Fri, Apr 29, 2016 at 12:02 PM, D K <danielforti...@gmail.com> wrote:
> Hi Galaxy-Devs,
> Is it possible to change the temporary directory used by planemo test?
> The reason is that one of my xml tools uses ssh to connect to a machine
> specifically due to licensing requirements e.g.:
> ssh address.com 'sh runCommand.sh $input' > $output
> Unfortunately, when executing a planemo test, the input is copied into a
> local temporary directory (/tmp) which is of course different from the /tmp
> directory on the computer where the bash script is being executed. I've
> tried changing the TMP and TEMP environment variables to a location that is
> available to both machines but that hasn't worked.
> Is there a workaround?
> Please keep all replies on the list by using "reply all"
> in your mail client. To manage your subscriptions to this
> and other Galaxy lists, please use the interface at:
> To search Galaxy mailing lists use the unified search at:
Please keep all replies on the list by using "reply all"
in your mail client. To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
To search Galaxy mailing lists use the unified search at: