Hi Marija,
thanks for the info, I suspect that eDirectory may not implement the "Who Am I?" LDAP extended operation, defined in RFC 4532, see:

https://www.python-ldap.org/doc/html/ldap.html#ldap.LDAPObject.whoami_s

Can you check (or have your sysadmins check) the logs of the eDirectory server?
I don't have any other idea, sorry!

Cheers,
Nicola

On 02/06/16 09:24, Durdevic, Marija wrote:
Hi Nicola,

The server is eDirectory. But this should not have any effect on LDAP 
authentication as the protocol is standardized, as they told me from 
administration support.
Cheers,
Marija

-----Original Message-----
From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of Nicola 
Soranzo
Sent: Wednesday, June 01, 2016 4:21 PM
To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] LDAP authentification

What is your LDAP server software? OpenLDAP or something else?

Cheers,
Nicola

On 01/06/16 15:14, Durdevic, Marija wrote:
No, I got the same error message :(

-----Original Message-----
From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of
Nicola Soranzo
Sent: Wednesday, June 01, 2016 4:11 PM
To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] LDAP authentification

Hi Marija,
does it work without

<ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options>


?

Cheers,
Nicola

On 01/06/16 14:17, Durdevic, Marija wrote:
Dear Nicola,

Thank you very much for your help, I appreciate it a lot.

With recommended changes, I am getting just error message in Galaxy web-app: No 
such user or invalid password. There is no error msg in log file.

I changed configuration to :

<?xml version="1.0"?>
<auth>
     <authenticator>
       <type>ldap</type>
       <filter>'{email}'.endswith('@mycompany.com')</filter>
       <options>
         <allow-register>True</allow-register>
         <auto-register>True</auto-register>
         <allow-password-change>False</allow-password-change>
         <server>ldap://ldap. mycompany.com</server>
         <ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options>
         <login-use-username>False</login-use-username>
         <continue-on-failure>True</continue-on-failure>
         <search-fields>uid,mail</search-fields>
         <search-filter>(mail={email})</search-filter>
         <search-base>ou=pers,ou=usr,o=mcp</search-base>
         <bind-user>{dn}</bind-user>
         <bind-password>{password}</bind-password>
         <auto-register-username>{uid}</auto-register-username>
         <auto-register-email>{mail}</auto-register-email>
       </options>
     </authenticator>

     <authenticator>
       <type>localdb</type>
       <options>
         <allow-password-change>true</allow-password-change>
       </options>
     </authenticator>
</auth>

And error in log file is:


galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,135 LDAP
authenticate: email is marija.durde...@medunigraz.at
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,136 LDAP
authenticate: username is None galaxy.auth.providers.ldap_ad DEBUG
2016-06-01 15:13:28,136 LDAP authenticate: options are {'bind-user':
'{dn}', 'search-fields': 'uid,mail', 'login-use-username': 'False',
'allow-register': 'True', 'ldap-options':
'OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW', 'auto-register-email':
'{mail}', 'server': 'ldap://ldap.medunigraz.at', 'auto-register':
'True', 'search-base': 'ou=pers,ou=usr,o=mug', 'search-filter':
'(mail={email})', 'continue-on-failure': 'True',
'auto-register-username': '{uid}', 'bind-password': '{password}',
'allow-password-change': 'False'} galaxy.auth.providers.ldap_ad DEBUG
2016-06-01 15:13:28,144 LDAP authenticate: Valid LDAP option pair
OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW -> 24582=3
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP
authenticate: dn is cn=o_durdevic,ou=pers,ou=usr,o=mug
galaxy.auth.providers.ldap_ad DEBUG 2016-06-01 15:13:28,160 LDAP
authenticate: search attributes are {'mail':
['marija.durde...@medunigraz.at'], 'uid': ['o_durdevic']} 
galaxy.auth.providers.ldap_ad WARNING 2016-06-01 15:13:28,169 LDAP 
authenticate: bind exception Traceback (most recent call last):
     File "lib/galaxy/auth/providers/ldap_ad.py", line 168, in authenticate
       whoami = l.whoami_s()
     File 
"/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py",
 line 641, in whoami_s
       return self._ldap_call(self._l.whoami_s,serverctrls,clientctrls)
     File 
"/home/galaxy/galaxy/.venv/local/lib/python2.7/site-packages/ldap/ldapobject.py",
 line 106, in _ldap_call
       result = func(*args,**kwargs)
PROTOCOL_ERROR: {'info': 'Unrecognized extended operation', 'desc':
'Protocol error'}
10.17.16.180 - - [01/Jun/2016:15:13:28 +0200] "POST /user/login?use_panels=False HTTP/1.1" 200 - 
"https://galaxy.medunigraz.at/user/login?use_panels=False"; "Mozilla/5.0 (Windows NT 6.1; 
WOW64) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/50.0.2661.102 Safari/537.36"
[pid: 23119|app: 0|req: 1/1] 10.17.16.180 () {54 vars in 1146 bytes}
[Wed Jun  1 15:13:28 2016] POST /user/login?use_panels=False =>
generated 5018 bytes in 101 msecs (HTTP/1.1 200) 2 headers in 73
bytes
(1 switches on core 0)


-----Original Message-----
From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of
Nicola Soranzo
Sent: Wednesday, June 01, 2016 2:56 PM
To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] LDAP authentification

Hi Marija,
try to change to this:

<search-filter>(uid={username})</search-filter>

and/or:

<bind-user>{dn}</bind-user>

and let us know if you still have errors (please attach the sanitized logs).

Cheers,
Nicola

On 01/06/16 12:51, Durdevic, Marija wrote:
Dear Nicola,

Thank you for response.
I am having all those information, and I am following sample file, but still 
unsuccessfully.
Here is my auth_conf file:


<?xml version="1.0"?>
<auth>
        <authenticator>
            <type>ldap</type>
            <filter>'{email}'.endswith('@mycompany.com')</filter>
            <options>
                <allow-register>False</allow-register>
                <auto-register>True</auto-register>
                <allow-password-change>False</allow-password-change>
                <server>ldap://ldap.mycompany.com</server>
                
<ldap-options>OPT_X_TLS_REQUIRE_CERT=OPT_X_TLS_ALLOW</ldap-options>
                <login-use-username>True</login-use-username>
                <continue-on-failure>False</continue-on-failure>
                <search-fields>uid, mail</search-fields>
                
<search-filter>(&#124;(mail={email})(uid={username}))</search-filter>
                <search-base>ou=pers,ou=usr,o=com</search-base>

                <bind-user>{email}</bind-user>
                <bind-password>{password}</bind-password>
                <auto-register-username>{uid}</auto-register-username>
                <auto-register-email>{email}</auto-register-email>
            </options>
        </authenticator>

        <authenticator>
            <type>localdb</type>
            <options>
                <allow-password-change>true</allow-password-change>
            </options>
        </authenticator>
</auth>


And

Thank you for your help.

Regards,
Marija

From: Nicola Soranzo [mailto:nicola.sora...@gmail.com] On Behalf Of
Nicola Soranzo
Sent: Wednesday, June 01, 2016 12:47 PM
To: Durdevic, Marija; galaxy-dev@lists.galaxyproject.org
Subject: Re: [galaxy-dev] LDAP authentification

Hi Marija,
LDAP authentication is usually quite site-specific, config/auth_conf.xml.sample 
contains example and documentation that should help you, but you still need to 
know the necessary details about how LDAP authentication works on your network, 
e.g. LDAP type (OpenLDAP or MS Active Directory), server address, search and 
bind parameters...

Cheers,
Nicola
On 31/05/16 14:20, Durdevic, Marija wrote:
Can someone please be so kind to post auth_conf.xml file with all changes. I am 
trying to setup it, but unsuccessfully.

Thanks in advance.
Regards,
Marija

Mag. Marija Đurđević
Core Facility Computational Bioanalytics

Medical University of Graz
Center for Medical Research
Stiftingtalstraße 24, A-8010 Graz
Austria

Phone: +43 316/385-73024
Fax:+43 316/385-73009

Email:
marija.djurdje...@medunigraz.at<mailto:marija.djurdjevic@medunigraz.
a
t>
Email:
marija.djurdje...@klinikum-graz.at<mailto:marija.djurdjevic@klinikum
-
graz.at>

Web: https://zmf.medunigraz.at/





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