Hello,
I am having troubles installing the last version of the tool Trinity. I
found that I have the same error as this issue (
https://github.com/galaxyproject/galaxy/issues/1947), so I tried the
suggested solution. It didn't work, so I posted the error in the issue.
Then, I tried to change the tmp folder to another one in the same filesytem
(and undoing the previous solution). Again it didn't work, but it gave a
different error:
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/install_manager.py",
line 123, in install_and_build_package_via_fabric
tool_dependency = self.install_and_build_package(
install_environment, tool_dependency, actions_dict )
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/install_manager.py",
line 108, in install_and_build_package
initial_download=False )
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/tool_dependencies/recipe/recipe_manager.py",
line 31, in execute_step
initial_download=initial_download )
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py",
line 845, in execute_step
destination_dir=os.path.join( action_dict[ 'destination_directory' ] ) )
File
"/steno-internal/projects/galaxy/galaxy-dist/lib/tool_shed/galaxy_install/tool_dependencies/recipe/step_handler.py",
line 864, in move_directory_files
shutil.move( source_file, destination_file )
File "/usr/lib/python2.7/shutil.py", line 130, in copy2
copyfile(src, dst)
File "/usr/lib/python2.7/shutil.py", line 82, in copyfile
with open(src, 'rb') as fsrc:
[Errno 21] Is a directory:
'/steno-internal/projects/galaxy/galaxy-dist/tmp/tmp-toolshed-mtd8Exq2w/trinityrnaseq-2.1.1/trinity-plugins/jellyfish'
I am using the Galaxy release *16.01. *Do you know how could I solve this
problem?
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