Hello, I have a general question. A metagenome prediction in PICRUSt worked
fine when I ran it requesting KEGG output (running on MAIN), but I got the
below error when requesting COG output. I could not find in the on-line
forums or other areas of support what may be needed regarding a different
input file or change in the normalization by copy number in order to get
COG instead of KEGG output?


Thank you very much for your help!
Ana

Traceback (most recent call last):   File
"/n/galaxy/www/galaxy_hutlab14/galaxy-hutlab14-20150109/tools/picrust_galaxy/scripts/predict_metagenomes.py",
line 337, in <module>     main()   File
"/n/galaxy/www/galaxy_hutlab14/galaxy-hutlab14-20150109/tools/picrust_galaxy/scripts/predict_metagenomes.py",
line 171, in main
ids_to_load=ids_to_load,verbose=opts.verbose,transpose=True)   File
"/n/galaxy/www/galaxy_hutlab14/galaxy-hutlab14-20150109/tools/picrust_galaxy/scripts/predict_metagenomes.py",
line 113, in load_data_table     genome_table_fh =
gzip.open(data_table_fp,'rb')   File
"/n/hutlab11/tools/python2.7.8/lib/python2.7/gzip.py", line 34, in
open     return
GzipFile(filename, mode, compresslevel)   File
"/n/hutlab11/tools/python2.7.8/lib/python2.7/gzip.py", line 94, in __init__
fileobj = self.myfileobj = __builtin__.open(filename, mode or 'rb')
IOError: [Errno 2] No such file or directory:
'/usr/local/galaxy-python/lib/python2.7/site-packages/picrust/data/cog_13_5_precalculated.tab.gz'
___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
  https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
  http://galaxyproject.org/search/mailinglists/

Reply via email to