Hi Steve,

are you fine restricting your tools to a recent Galaxy version, let's
say 6 month old?

If you forget about tool_depenencies.xml files, completely forget these!
Conda packaging is the way to go and way more easy for you.

Let me know and I will give a short introduction or follow the
description on https://github.com/bioconda/bioconda-recipes to create a
PR and a package for your tool.

This can be used by Galaxy automatically.
Thanks,
Bjoern

Am 14.07.2016 um 03:49 schrieb Steve Cassidy:
> I’m just getting my head around tool dependencies and in doing so trying to 
> push my tools to a local toolshed which I can handily run with the 
> planemo/server docker image via Kitematic.
> 
> That toolshed is set up with an admin user 
> plan...@test.com<mailto:plan...@test.com> so I have a stanza in my 
> .planemo.yml:
> 
> shed_username: "stevecassidy"
> sheds:
>   http://localhost:32768/:
>     key: ""
>     email: "plan...@test.com<mailto:plan...@test.com>"
>     password: "planemo"
> 
> Now I try to create a repository in the toolshed with planemo:
> 
> $ planemo shed_create --shed_target http://localhost:32768/
> Repository created
> cd '/Users/steve/projects/hcsvlab-galaxy/tools/alveo' && git rev-parse HEAD
> cd '/Users/steve/projects/hcsvlab-galaxy/tools/alveo' && git diff --quiet
> Repository [alveoimport] does not exist in the targeted Tool Shed.
> 
> 
> Note the conflicting messages here. The repository is created (and I can 
> confirm that it is there) but then I get the message that the repo does not 
> exist in the Toolshed.  After a bit of digging it turns out that this is 
> because the repo is owned by the user ‘planemo’ rather than my username as 
> declared in .planemo.yml.  If I add —owner plane to the command then it works 
> fine.
> 
> So I’m not sure if this is a bug in the shed_create code or a weird 
> interaction with the setup on planemo/server.
> 
> Steve
> 
> —
> Department of Computing, Macquarie University
> http://web.science.mq.edu.au/~cassidy
> 
> 
> 
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