I’m just getting my head around tool dependencies and in doing so trying to
push my tools to a local toolshed which I can handily run with the
planemo/server docker image via Kitematic.
That toolshed is set up with an admin user
plan...@test.com<mailto:plan...@test.com> so I have a stanza in my .planemo.yml:
Now I try to create a repository in the toolshed with planemo:
$ planemo shed_create --shed_target http://localhost:32768/
cd '/Users/steve/projects/hcsvlab-galaxy/tools/alveo' && git rev-parse HEAD
cd '/Users/steve/projects/hcsvlab-galaxy/tools/alveo' && git diff --quiet
Repository [alveoimport] does not exist in the targeted Tool Shed.
Note the conflicting messages here. The repository is created (and I can
confirm that it is there) but then I get the message that the repo does not
exist in the Toolshed. After a bit of digging it turns out that this is
because the repo is owned by the user ‘planemo’ rather than my username as
declared in .planemo.yml. If I add —owner plane to the command then it works
So I’m not sure if this is a bug in the shed_create code or a weird interaction
with the setup on planemo/server.
Department of Computing, Macquarie University
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