Hello Galaxy Team,
We're from the Bioinformatics Shared Resources at Cold Spring Harbor Lab and
we're trying to create a new flavour of Galaxy for local use in the lab using
We want to add tools that are specific for our lab, such as importing files
from our system, onto this flavour of Galaxy using Docker containers. Is there
a recommended way to do this?
I've taken a look at the README from:
I have been able to successfully create an instance of Galaxy where the
homepage is different and tools are imported from the Tool Shed. However, I
cannot figure out how to install tools onto Galaxy that are not from the Tool
Shed. I have tried creating a container, putting the tools into the tools
folder, changing the tool conf and the integrated tool panel xml file. Then
committing the container and creating a new image. From the new image, I tried
creating another container and running it. This does not create a Galaxy
instance with the new tool. (This also does not seem like the best way to go
about something like this.)
Thank you for your help.
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