Hi Dannon,

Yes, the
"/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py"
does still exist.

If it's relevant I did a:

git commit -a -m 'changes made locally prior to upgrade to 16.07'
git pull origin master

I had to move the file "lib/galaxy/datatypes/checkers.py" but otherwise
didn't get any other errors


On Fri, Aug 26, 2016 at 9:38 AM, Dannon Baker <dannon.ba...@gmail.com>
wrote:

> Can you check to see if that file (/remote/home/galaxyd/tmp/gala
> xy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py) does still
> exist?  If it does not, it may be a leftover .pyc file (which you can
> delete safely).  If you'd like to just clean out *all* the compiled python
> (which is also safe), run something like ```find <galaxy/lib> -name "*.pyc"
> -delete```.
>
> On Fri, Aug 26, 2016 at 12:35 PM, D K <danielforti...@gmail.com> wrote:
>
>> I have modified some files in my own local galaxy commit (I think only
>> the sniffers in lib/galaxy/datatypes)
>>
>>
>>
>> On Fri, Aug 26, 2016 at 9:31 AM, Dannon Baker <dannon.ba...@gmail.com>
>> wrote:
>>
>>> Hey DK,
>>>
>>> The cloudlaunch controller was deprecated and should not be in 16.07.
>>> Is this a custom modification you have?
>>>
>>> -Dannon
>>>
>>> On Fri, Aug 26, 2016 at 12:30 PM, D K <danielforti...@gmail.com> wrote:
>>>
>>>> Hi Galaxy-devs,
>>>>
>>>> I just tried upgrading to 16.07 from 16.01 and get this error when
>>>> starting up:
>>>>
>>>>
>>>>> Traceback (most recent call last):
>>>>>   File "./scripts/paster.py", line 26, in <module>
>>>>>     serve.run()
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/serve.py",
>>>>> line 1061, in run
>>>>>     invoke(command, command_name, options, args[1:])
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/serve.py",
>>>>> line 1067, in invoke
>>>>>     exit_code = runner.run(args)
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/serve.py",
>>>>> line 223, in run
>>>>>     result = self.command()
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/serve.py",
>>>>> line 639, in command
>>>>>     app = loadapp( app_spec, name=app_name, relative_to=base,
>>>>> global_conf=vars)
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py",
>>>>> line 292, in loadapp
>>>>>     return loadobj(APP, uri, name=name, **kw)
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py",
>>>>> line 317, in loadobj
>>>>>     return context.create()
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py",
>>>>> line 755, in create
>>>>>     return self.object_type.invoke(self)
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py",
>>>>> line 274, in invoke
>>>>>     filtered = context.next_context.create()
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py",
>>>>> line 755, in create
>>>>>     return self.object_type.invoke(self)
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py",
>>>>> line 191, in invoke
>>>>>     return fix_call(context.object, context.global_conf,
>>>>> **context.local_conf)
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py",
>>>>> line 94, in fix_call
>>>>>     val = callable(*args, **kw)
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/buildapp.py",
>>>>> line 39, in app_factory
>>>>>     return paste_app_factory( global_conf, **kwargs )
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/buildapp.py",
>>>>> line 76, in paste_app_factory
>>>>>     webapp.add_ui_controllers( 'galaxy.webapps.galaxy.controllers',
>>>>> app )
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/web/framework/webapp.py",
>>>>> line 115, in add_ui_controllers
>>>>>     module = import_module( module_name )
>>>>>   File "/opt/rh/python27/root/usr/lib64/python2.7/importlib/__init__.py",
>>>>> line 37, in import_module
>>>>>     __import__(name)
>>>>>   File 
>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py",
>>>>> line 16, in <module>
>>>>>     from galaxy.util.json import dumps
>>>>> ImportError: cannot import name dumps
>>>>
>>>>
>>>> Any suggestions?
>>>>
>>>> Thanks!
>>>>
>>>> ___________________________________________________________
>>>> Please keep all replies on the list by using "reply all"
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>>>>
>>>
>>>
>>
>
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