Can you check the git log for that controller, to see how it got added back to, or remained in, the codebase?
On Fri, Aug 26, 2016, 12:40 PM D K <danielforti...@gmail.com> wrote: > Hi Dannon, > > Yes, the > "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py" > does still exist. > > If it's relevant I did a: > > git commit -a -m 'changes made locally prior to upgrade to 16.07' > git pull origin master > > I had to move the file "lib/galaxy/datatypes/checkers.py" but otherwise > didn't get any other errors > > > On Fri, Aug 26, 2016 at 9:38 AM, Dannon Baker <dannon.ba...@gmail.com> > wrote: > >> Can you check to see if that file (/remote/home/galaxyd/tmp/ >> galaxy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py) does still >> exist? If it does not, it may be a leftover .pyc file (which you can >> delete safely). If you'd like to just clean out *all* the compiled python >> (which is also safe), run something like ```find <galaxy/lib> -name "*.pyc" >> -delete```. >> >> On Fri, Aug 26, 2016 at 12:35 PM, D K <danielforti...@gmail.com> wrote: >> >>> I have modified some files in my own local galaxy commit (I think only >>> the sniffers in lib/galaxy/datatypes) >>> >>> >>> >>> On Fri, Aug 26, 2016 at 9:31 AM, Dannon Baker <dannon.ba...@gmail.com> >>> wrote: >>> >>>> Hey DK, >>>> >>>> The cloudlaunch controller was deprecated and should not be in 16.07. >>>> Is this a custom modification you have? >>>> >>>> -Dannon >>>> >>>> On Fri, Aug 26, 2016 at 12:30 PM, D K <danielforti...@gmail.com> wrote: >>>> >>>>> Hi Galaxy-devs, >>>>> >>>>> I just tried upgrading to 16.07 from 16.01 and get this error when >>>>> starting up: >>>>> >>>>> >>>>>> Traceback (most recent call last): >>>>>> File "./scripts/paster.py", line 26, in <module> >>>>>> serve.run() >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/serve.py", >>>>>> line 1061, in run >>>>>> invoke(command, command_name, options, args[1:]) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/serve.py", >>>>>> line 1067, in invoke >>>>>> exit_code = runner.run(args) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/serve.py", >>>>>> line 223, in run >>>>>> result = self.command() >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/serve.py", >>>>>> line 639, in command >>>>>> app = loadapp( app_spec, name=app_name, relative_to=base, >>>>>> global_conf=vars) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py", >>>>>> line 292, in loadapp >>>>>> return loadobj(APP, uri, name=name, **kw) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py", >>>>>> line 317, in loadobj >>>>>> return context.create() >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py", >>>>>> line 755, in create >>>>>> return self.object_type.invoke(self) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py", >>>>>> line 274, in invoke >>>>>> filtered = context.next_context.create() >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py", >>>>>> line 755, in create >>>>>> return self.object_type.invoke(self) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py", >>>>>> line 191, in invoke >>>>>> return fix_call(context.object, context.global_conf, >>>>>> **context.local_conf) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/util/pastescript/loadwsgi.py", >>>>>> line 94, in fix_call >>>>>> val = callable(*args, **kw) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/buildapp.py", >>>>>> line 39, in app_factory >>>>>> return paste_app_factory( global_conf, **kwargs ) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/buildapp.py", >>>>>> line 76, in paste_app_factory >>>>>> webapp.add_ui_controllers( 'galaxy.webapps.galaxy.controllers', >>>>>> app ) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/web/framework/webapp.py", >>>>>> line >>>>>> 115, in add_ui_controllers >>>>>> module = import_module( module_name ) >>>>>> File >>>>>> "/opt/rh/python27/root/usr/lib64/python2.7/importlib/__init__.py", line >>>>>> 37, >>>>>> in import_module >>>>>> __import__(name) >>>>>> File >>>>>> "/remote/home/galaxyd/tmp/galaxy2/lib/galaxy/webapps/galaxy/controllers/cloudlaunch.py", >>>>>> line 16, in <module> >>>>>> from galaxy.util.json import dumps >>>>>> ImportError: cannot import name dumps >>>>> >>>>> >>>>> Any suggestions? >>>>> >>>>> Thanks! >>>>> >>>>> ___________________________________________________________ >>>>> Please keep all replies on the list by using "reply all" >>>>> in your mail client. To manage your subscriptions to this >>>>> and other Galaxy lists, please use the interface at: >>>>> https://lists.galaxyproject.org/ >>>>> >>>>> To search Galaxy mailing lists use the unified search at: >>>>> http://galaxyproject.org/search/mailinglists/ >>>>> >>>> >>>> >>> >> >
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