Yes that looks good.  The git pull will work on top of the AMI (16.04)?    I 
don't think that I need cloudman to stop/start, just supervisorctl, which I 
have been using to manage galaxy.

Thanks

David

--
David Lapointe Ph.D.
Sr. Bioinformatics Specialist
Research Technology (RT)
Tufts Technology Services (TTS)
16 Dearborn Road
Somerville MA 02144

Phone:  617-627-5319
Fax: 617-627-3667
http://it.tufts.edu

From: Enis Afgan <enis.af...@irb.hr<mailto:enis.af...@irb.hr>>
Date: Thursday, September 15, 2016 at 5:30 PM
To: David Lapointe <david.lapoi...@tufts.edu<mailto:david.lapoi...@tufts.edu>>
Cc: 
"galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>" 
<galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>>
Subject: Re: [galaxy-dev] Modifying a Cloud Cluster Instance

Give you seemingly have a custom deployment, a manual upgrade is probably best. 
Instructions are available here: 
https://wiki.galaxyproject.org/CloudMan/Services/Galaxy#Updating_Galaxy_source

We'll get the 16.07 release done too but juding by the way things look, it 
won't be until the next month.

On Wed, Sep 14, 2016 at 11:23 AM, Lapointe, David 
<david.lapoi...@tufts.edu<mailto:david.lapoi...@tufts.edu>> wrote:
Hi Enis,

Yes I figured what I was doing wrong. Using Cloudman to restart services 
overwrote my confs.   Using the CLI to manage services keeps everything in 
place, though I would like to figure out what is the optimal way to move to 
16.07. Wait for the AMI or update?
--
David Lapointe Ph.D.
Sr. Bioinformatics Specialist
Research Technology (RT)
Tufts Technology Services (TTS)
16 Dearborn Road
Somerville MA 02144

Phone:  617-627-5319<tel:617-627-5319>
Fax: 617-627-3667<tel:617-627-3667>
http://it.tufts.edu

From: Enis Afgan <enis.af...@irb.hr<mailto:enis.af...@irb.hr>>
Date: Wednesday, September 14, 2016 at 11:01 AM
To: David Lapointe <david.lapoi...@tufts.edu<mailto:david.lapoi...@tufts.edu>>
Cc: 
"galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>" 
<galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>>
Subject: Re: [galaxy-dev] Modifying a Cloud Cluster Instance

Hi David,
I totally missed this email from you - apologies! Are you still trying to do 
this or did you figure it out? Following the general guidelines on customizing 
the instance is a good place to start. There is an option in CloudMan to turn 
on non-signed SSL (from the Admin page) but the steps performed may be useful 
in trying to do the same manually. I believe it's necessary to just update and 
reload the Nginx configuration. A template can be found here 
https://github.com/galaxyproject/cloudman/blob/8db478a8d777bcc48ed8c838f1f9de8519a11e60/cm/conftemplates/nginx_server_ssl.default

Hope this helps and, again, sorry for not getting back to you earlier.


On Thu, Aug 11, 2016 at 2:30 PM, Lapointe, David 
<david.lapoi...@tufts.edu<mailto:david.lapoi...@tufts.edu>> wrote:
This is on Amazon I should add.
--
David Lapointe Ph.D.
Sr. Bioinformatics Specialist
Research Technology (RT)
Tufts Technology Services (TTS)
16 Dearborn Road
Somerville MA 02144

Phone:  617-627-5319<tel:617-627-5319>
Fax: 617-627-3667<tel:617-627-3667>
http://it.tufts.edu

From: galaxy-dev 
<galaxy-dev-boun...@lists.galaxyproject.org<mailto:galaxy-dev-boun...@lists.galaxyproject.org>>
 on behalf of David Lapointe 
<david.lapoi...@tufts.edu<mailto:david.lapoi...@tufts.edu>>
Date: Thursday, August 11, 2016 at 1:44 PM
To: 
"galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>" 
<galaxy-dev@lists.galaxyproject.org<mailto:galaxy-dev@lists.galaxyproject.org>>
Subject: [galaxy-dev] Modifying a Cloud Cluster Instance

I have  a Cloudman instance up and running, but I would like to add SSL ( I 
have a signed cert and key ) and productionize it.  I see several methods 
documented,but it's not clear which one is preferred: edit in place then 
persist changes and restart  (wiki/Cloudman/CustomizeGalaxyCloud) seems best to 
me. Any advice?

Thanks

David
--
David Lapointe Ph.D.
Sr. Bioinformatics Specialist
Research Technology (RT)
Tufts Technology Services (TTS)
16 Dearborn Road
Somerville MA 02144

Phone:  617-627-5319<tel:617-627-5319>
Fax: 617-627-3667<tel:617-627-3667>
http://it.tufts.edu

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