Is there any part of conda here? This reminds me of the exact same problems that I had with a few libs (readline for example) and conda linkage.

On 2016-10-03 13:37, Nicola Soranzo wrote:
I suppose this is the same as
https://github.com/galaxyproject/tools-devteam/issues/100 , just for a
different R version.

Cheers,
Nicola

On 03/10/16 20:10, Nikolaos Tur wrote:

Hi,

installation of deseq2 1.10.0 causes next problem:


/home/galaxy/galaxy/tools/dependencies/R/3.2.1/iuc/package_r_3_2_1/d9f7d84125b7/lib/R/bin/exec/R:
error while loading shared libraries: libreadline.so.6: cannot open
shared object file: No such file or directory Installed tool
dependencies: deseq2

R 3.2.1 installed without problems
readline 6.3 installed too

why does it happen? Is something missing?

The same readline dependency problem from R happen also during
installation of packages bioconductor_limma & bioconductor_edger

Meanwhile dseq2 1.2.10 depended on R 3.0.3 has installed but shown
warnings and also related to R:


/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
warning: libgfortran.so.1, needed by

/home/galaxy/galaxy/tools/dependencies/R/3.0.3/iuc/package_r_3_0_3/afc48696ee5c/lib/R/lib/libR.so,
not found (try using -rpath or -rpath-link)

/usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
warning: libreadline.so.6, needed by

/home/galaxy/galaxy/tools/dependencies/R/3.0.3/iuc/package_r_3_0_3/afc48696ee5c/lib/R/lib/libR.so,
not found (try using -rpath or -rpath-link)

Thanx,
Nikolaos

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