So... it seems there is not solution of this. And for the long time. Or I
am wrong? And it is somehow related to ncurses.
But ncrurses as well as readline are in the list of linked libraries. At
least what I see in tool_dependencies.xml


to Tiago Antao there is no conda there.

Cheers,
NIkolaos

On Mon, Oct 3, 2016 at 9:37 PM, Nicola Soranzo <nsora...@tiscali.it> wrote:

> I suppose this is the same as https://github.com/
> galaxyproject/tools-devteam/issues/100 , just for a different R version.
>
> Cheers,
> Nicola
>
>
>
> On 03/10/16 20:10, Nikolaos Tur wrote:
>
> Hi,
>
> installation of deseq2 1.10.0 causes next problem:
>
> /home/galaxy/galaxy/tools/dependencies/R/3.2.1/iuc/
> package_r_3_2_1/d9f7d84125b7/lib/R/bin/exec/R: error while loading shared
> libraries: libreadline.so.6: cannot open shared object file: No such file
> or directory Installed tool dependencies: deseq2
>
> R 3.2.1 installed without problems
> readline 6.3 installed too
>
> why does it happen? Is something missing?
>
> The same readline dependency problem from R happen also during
> installation of packages bioconductor_limma & bioconductor_edger
>
> Meanwhile dseq2 1.2.10 depended on R 3.0.3 has installed but shown
> warnings and also related to R:
>
> /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
> warning: libgfortran.so.1, needed by /home/galaxy/galaxy/tools/
> dependencies/R/3.0.3/iuc/package_r_3_0_3/afc48696ee5c/lib/R/lib/libR.so,
> not found (try using -rpath or -rpath-link)
> /usr/lib64/gcc/x86_64-suse-linux/4.8/../../../../x86_64-suse-linux/bin/ld:
> warning: libreadline.so.6, needed by /home/galaxy/galaxy/tools/
> dependencies/R/3.0.3/iuc/package_r_3_0_3/afc48696ee5c/lib/R/lib/libR.so,
> not found (try using -rpath or -rpath-link)
>
> Thanx,
> Nikolaos
>
>
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