Hi DK, Looking at your XML that looks OK.
It might not be important, but how exactly are you running planemo test? I'm asking because currently it will not create tool-data/twobit.loc for you from your sample file - although in that case I would have expected a different error message: https://github.com/galaxyproject/planemo/issues/530 https://github.com/galaxyproject/planemo/issues/530 Is planemo lint happy with your tool? Peter On Thu, Oct 6, 2016 at 11:08 PM, D K <danielforti...@gmail.com> wrote: > Hi galaxy-dev, > > I'm having a problem running a test using planemo where I would like the > value of a parameter taken from one of the data tables. I get the following > error in planemo: > > 'Error creating a job for these tool inputs - Parameter refGenomeSource_type > requires a value, but has no legal values defined.\n > > > From my script XML: > >> <param name="refGenomeSource_type" type="select" label="Select a >> reference genome / transcriptome"> >> <options from_data_table="type_indexes"> >> </options> >> </param> >> ... >> <tests> >> <test> >> <param name="refGenomeSource_type" value="hsapiens"/> >> </test> >> </tests> >> >> From my "tool_data_table_conf.xml.sample" and "tool_data_table_conf.xml.test" > (mirrored) > >> <table name="type_indexes" comment_char="#" allow_duplicate_entries=" >> False"> >> <columns>value, name, path</columns> >> <file path="tool-data/twobit.loc" /> >> </table> > > > and from twobit.loc (where the columns are tab separated): > >> hsapiens H. sapiens (hg38) /remote/RMS/users/galaxy/ >> reference_genomes/MFEprimer_index/Homo_sapiens.GRCh38.cdna.all.fa > > > Any suggestions would be greatly appreciated! > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ >
___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/