Hi galaxy-dev, I'm having a problem running a test using planemo where I would like the value of a parameter taken from one of the data tables. I get the following error in planemo:
'Error creating a job for these tool inputs - Parameter refGenomeSource_type requires a value, but has no legal values defined.\n >From my script XML: > <param name="refGenomeSource_type" type="select" label="Select a > reference genome / transcriptome"> > <options from_data_table="type_indexes"> > </options> > </param> > ... > <tests> > <test> > <param name="refGenomeSource_type" value="hsapiens"/> > </test> > </tests> > > From my "tool_data_table_conf.xml.sample" and "tool_data_table_conf.xml.test" (mirrored) > <table name="type_indexes" comment_char="#" > allow_duplicate_entries="False"> > <columns>value, name, path</columns> > <file path="tool-data/twobit.loc" /> > </table> and from twobit.loc (where the columns are tab separated): > hsapiens H. sapiens (hg38) > /remote/RMS/users/galaxy/reference_genomes/MFEprimer_index/Homo_sapiens.GRCh38.cdna.all.fa Any suggestions would be greatly appreciated!
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