On 10/19/2016 03:23 PM, Martin Čech wrote:
Hi Pierre,
how old is your Tool Shed? When was the last time a tool installation
from it succeeded?
Hi martin,
here is the log from the toolshed :
commit 73f46f4e08141f78927056fa3e4709d0ab323972
Merge: 05e6682 27dc31a
Author: Nicola Soranzo
Date: Wed Nov 18 10:06:53 2015 +0000
I was able to install my tool from this toolshed a few minutes ago.
The second attempt failed.
Thanks for the helps,
Pierre
thanks
M.
On Wed, Oct 19, 2016 at 9:20 AM Pierre Lindenbaum
<pierre.lindenb...@univ-nantes.fr
<mailto:pierre.lindenb...@univ-nantes.fr>> wrote:
Hi all, I got a "Internal Server Error" ==> "KeyError:
'tool_panel_section' " when I'm trying to install a new tool from our
toolshed (see stacktrace below).
My galaxy instance was cloned from
commit 217854827ac7dfc88c5388cd2ecb24fffd86c060
Merge: 056a7e0 ad0d0bc
Author: Björn Grüning <bjo...@gruenings.eu
<mailto:bjo...@gruenings.eu>>
Date: Mon Oct 10 10:23:37 2016 +0200
with only a few minor(?) (admin...) modifications under config/*
This error was raised when I've removed + re-installed a tool from the
toolshed.
How can I fix this ?
Thanks
Pierre
127.0.0.1 - - [19/Oct/2016:15:15:44 +0200] "POST
/admin_toolshed/prepare_for_install HTTP/1.1" 500 -
"http://127.0.0.1:8080/admin_toolshed/prepare_for_install?changeset_revisions=a38c6719c9c3&repository_ids=9b8af19fb3feae8b&tool_shed_url=http%3A%2F%2Fmasked.host.fr%2Ftoolshed%2F";
"Mozilla/5.0 (X11; Ubuntu; Linux i686; rv:49.0) Gecko/20100101
Firefox/49.0"
Error - <type 'exceptions.KeyError'>: 'tool_panel_section'
URL: http://127.0.0.1:8080/admin_toolshed/prepare_for_install
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/middleware/error.py',
line 151 in __call__
app_iter = self.application(environ, sr_checker)
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/.venv/local/lib/python2.7/site-packages/paste/recursive.py',
line 85 in __call__
return self.application(environ, start_response)
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/.venv/local/lib/python2.7/site-packages/paste/httpexceptions.py',
line 640 in __call__
return self.application(environ, start_response)
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/base.py',
line 135 in __call__
return self.handle_request( environ, start_response )
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/base.py',
line 194 in handle_request
body = method( trans, **kwargs )
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/decorators.py',
line 98 in decorator
return func( self, trans, *args, **kwargs )
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
line 1080 in prepare_for_install
install_repository_manager.handle_tool_shed_repositories(
installation_dict )
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/install_manager.py',
line 633 in handle_tool_shed_repositories
new_tool_panel_section_label=new_tool_panel_section_label )
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py',
line 198 in create_repository_dependency_objects
self.app.installed_repository_manager.activate_repository(
repository_db_record )
File
'/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/installed_repository_manager.py',
line 94 in activate_repository
tool_panel_dict = repository.metadata[ 'tool_panel_section' ]
KeyError: 'tool_panel_section'
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