Hi Pierre,

It seems that instead of uninstalling you de-activated the repository. I
would uninstall the repository again. Please mind that there is this UX
hurdle when you want to uninstall - you have to _check_ the checkbox
labeled "Check to uninstall or leave blank to deactivate" that is in the
bottom of the uninstall page.

Hope this helps and please let us know when it does not.

Thanks,

Martin



On Wed, Oct 19, 2016 at 9:29 AM Pierre Lindenbaum <
pierre.lindenb...@univ-nantes.fr> wrote:

> On 10/19/2016 03:23 PM, Martin Čech wrote:
> > Hi Pierre,
> >
> > how old is your Tool Shed? When was the last time a tool installation
> > from it succeeded?
> >
>
> Hi martin,
>
> here is the log from the toolshed :
>
>     commit 73f46f4e08141f78927056fa3e4709d0ab323972
>     Merge: 05e6682 27dc31a
>     Author: Nicola Soranzo
>     Date:   Wed Nov 18 10:06:53 2015 +0000
>
>
> I was able to install my tool from this toolshed a few minutes ago.
> The second attempt failed.
>
> Thanks for the helps,
>
> Pierre
>
>
> > thanks
> >
> > M.
> >
> > On Wed, Oct 19, 2016 at 9:20 AM Pierre Lindenbaum
> > <pierre.lindenb...@univ-nantes.fr
> > <mailto:pierre.lindenb...@univ-nantes.fr>> wrote:
> >
> >     Hi all, I got a "Internal Server Error" ==> "KeyError:
> >     'tool_panel_section' " when I'm trying to install a new tool from our
> >     toolshed (see stacktrace below).
> >
> >     My galaxy instance was cloned from
> >
> >
> >             commit 217854827ac7dfc88c5388cd2ecb24fffd86c060
> >             Merge: 056a7e0 ad0d0bc
> >             Author: Björn Grüning <bjo...@gruenings.eu
> >     <mailto:bjo...@gruenings.eu>>
> >             Date:   Mon Oct 10 10:23:37 2016 +0200
> >
> >     with only a few minor(?) (admin...) modifications under config/*
> >     This error was raised when I've removed + re-installed a tool from
> the
> >     toolshed.
> >
> >     How can I fix this ?
> >
> >     Thanks
> >
> >     Pierre
> >
> >
> >     127.0.0.1 - - [19/Oct/2016:15:15:44 +0200] "POST
> >     /admin_toolshed/prepare_for_install HTTP/1.1" 500 -
> >     "
> http://127.0.0.1:8080/admin_toolshed/prepare_for_install?changeset_revisions=a38c6719c9c3&repository_ids=9b8af19fb3feae8b&tool_shed_url=http%3A%2F%2Fmasked.host.fr%2Ftoolshed%2F
> "
> >     "Mozilla/5.0 (X11; Ubuntu; Linux i686; rv:49.0) Gecko/20100101
> >     Firefox/49.0"
> >     Error - <type 'exceptions.KeyError'>: 'tool_panel_section'
> >     URL: http://127.0.0.1:8080/admin_toolshed/prepare_for_install
> >     File
> >
>  
> '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/middleware/error.py',
> >     line 151 in __call__
> >        app_iter = self.application(environ, sr_checker)
> >     File
> >
>  
> '/home/lindenb/tmp/GALAXY/galaxy.gitlab/.venv/local/lib/python2.7/site-packages/paste/recursive.py',
> >     line 85 in __call__
> >        return self.application(environ, start_response)
> >     File
> >
>  
> '/home/lindenb/tmp/GALAXY/galaxy.gitlab/.venv/local/lib/python2.7/site-packages/paste/httpexceptions.py',
> >     line 640 in __call__
> >        return self.application(environ, start_response)
> >     File
> >
>  '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/base.py',
> >     line 135 in __call__
> >        return self.handle_request( environ, start_response )
> >     File
> >
>  '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/base.py',
> >     line 194 in handle_request
> >        body = method( trans, **kwargs )
> >     File
> >
>  
> '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/web/framework/decorators.py',
> >     line 98 in decorator
> >        return func( self, trans, *args, **kwargs )
> >     File
> >
>  
> '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/galaxy/webapps/galaxy/controllers/admin_toolshed.py',
> >     line 1080 in prepare_for_install
> >        install_repository_manager.handle_tool_shed_repositories(
> >     installation_dict )
> >     File
> >
>  
> '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/install_manager.py',
> >     line 633 in handle_tool_shed_repositories
> >        new_tool_panel_section_label=new_tool_panel_section_label )
> >     File
> >
>  
> '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/repository_dependencies/repository_dependency_manager.py',
> >     line 198 in create_repository_dependency_objects
> >      self.app.installed_repository_manager.activate_repository(
> >     repository_db_record )
> >     File
> >
>  
> '/home/lindenb/tmp/GALAXY/galaxy.gitlab/lib/tool_shed/galaxy_install/installed_repository_manager.py',
> >     line 94 in activate_repository
> >        tool_panel_dict = repository.metadata[ 'tool_panel_section' ]
> >     KeyError: 'tool_panel_section'
> >
>
>
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