You might find this work useful for fetching bacteria from the NCBI: https://github.com/kblin/ncbi-genome-download
Peter On Tue, Oct 25, 2016 at 12:54 PM, Vos, Michiel <m....@exeter.ac.uk> wrote: > > > Dear Galaxy developers, > > > > We hereby want to ask if anyone is interested in helping out to repair and > update our Galaxy tool ‘odose’: > > > > Webserver > > > > Publication > > > > Public server page > > > > Github > > > > Odose enables users to perform an array of population genetics tests on > prokaryote genomes. Our tool is currently linked to NCBI to download various > files, but continuous restructuring at NCBI has resulted in broken links > which prevent the pipeline from working. Developer Tim te Beek has moved on > outside academia and does not have the time to fix it, but is available to > give answer question/give instructions. We believe our tool is highly useful > for microbiologists and would greatly appreciate any help from the Galaxy > community to get it working properly again! Please get in touch if you would > like to know more. > > > > Best Wishes, Michiel Vos, Mark van Passel and Tim te Beek > > > > > > > > Michiel Vos > > European Centre for Environment and Human Health > > University of Exeter > > ESI Building, Penryn Campus > > TR10 9FE Penryn, UK > > 0044 (0)1326259464 > > https://coastalpathogens.wordpress.com/ > > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/mailinglists/ ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
