I've run into issues over the past year where some jobs would
occasionally fail to start (stuck in a `new` state). I tracked them down
to a situataion where `dataset.deleted` is set to `t` yet the
`history_dataset_association.deleted` is `f`. Simply setting
`dataset.deleted` to `f` in those instances resolved the issue and the
jobs ran. The datasets have all still been on disk.
Since this is a pretty annoying situation, I thought I'd check to see if
there are other datasets with this problem. Shockingly, I found many
thousands of such datasets:
from dataset d
join history_dataset_association hda on d.id = hda.dataset_id
where d.deleted = 't' and hda.deleted = 'f';
I'm hesitant to update so many rows in my database so I thought I'd put
this out there for comment. What do others see when running the above
query? Has anyone run into this or a similar issue? Thanks.
Lance Parsons - Scientific Programmer
Carl C. Icahn Laboratory - Room 136
Lewis-Sigler Institute for Integrative Genomics
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