I've run into issues over the past year where some jobs would occasionally fail to start (stuck in a `new` state). I tracked them down to a situataion where `dataset.deleted` is set to `t` yet the `history_dataset_association.deleted` is `f`. Simply setting `dataset.deleted` to `f` in those instances resolved the issue and the jobs ran. The datasets have all still been on disk.

Since this is a pretty annoying situation, I thought I'd check to see if there are other datasets with this problem. Shockingly, I found many thousands of such datasets:


```
select count(d.id)
    from dataset d
    join history_dataset_association hda on d.id = hda.dataset_id
    where d.deleted = 't' and hda.deleted = 'f';
 count
-------
 76977
(1 row)
```

I'm hesitant to update so many rows in my database so I thought I'd put this out there for comment. What do others see when running the above query? Has anyone run into this or a similar issue? Thanks.

--
Lance Parsons - Scientific Programmer
Carl C. Icahn Laboratory - Room 136
Lewis-Sigler Institute for Integrative Genomics
Princeton University

___________________________________________________________
Please keep all replies on the list by using "reply all"
in your mail client.  To manage your subscriptions to this
and other Galaxy lists, please use the interface at:
 https://lists.galaxyproject.org/

To search Galaxy mailing lists use the unified search at:
 http://galaxyproject.org/search/mailinglists/

Reply via email to