Hi,

I have a tool that produces multiple output files a log file, two bam files. (https://github.com/nugentechnologies/nudup)


The tool it self provides an option called --out to specify a path to a directory with a prefix that will be added to the output files:

--out /tmp/out

this will produce 3 files:

/tmp/out_dup_log.txt
/tmp/out.sorted.dedup.bam
/tmp/out.sorted.markdup.bam

so my question is if this out prefix will give me problems overwriting next output files coming from this tool?


Cheers Jochen



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