Don't have it use /tmp, but rather the current working directory and
then everything will work. Galaxy jobs are run in individual working
directories, so you can exploit that to ensure that files aren't
Devon Ryan, Ph.D.
Max Planck Institute of Immunobiology and Epigenetics
On Wed, Jan 4, 2017 at 12:32 PM, Jochen Bick <jochen.b...@usys.ethz.ch> wrote:
> I have a tool that produces multiple output files a log file, two bam files.
> The tool it self provides an option called --out to specify a path to a
> directory with a prefix that will be added to the output files:
> --out /tmp/out
> this will produce 3 files:
> so my question is if this out prefix will give me problems overwriting next
> output files coming from this tool?
> Cheers Jochen
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