Hi all, A few of my tools have for a long time used Galaxy's own parsing functionality in order to avoid an external dependency. Lately this has stopped working on my TravisCI testing with planemo using the Galaxy dev branch (the stable master branch is fine): e.g.
https://travis-ci.org/peterjc/pico_galaxy/builds/196655736 The tools fail with things like: | from galaxy_utils.sequence.fasta import fastaReader, fastaWriter | ImportError: No module named galaxy_utils.sequence.fasta or: | from galaxy_utils.sequence.fastq import fastqReader | ImportError: No module named galaxy_utils.sequence.fastq Is this a temporary regression in Galaxy, or a deliberate change? Do the tools need to do something to explicit have access to the Galaxy Python library, or are they now considered private? If so, I can update these tools to use an explicit dependency for parsing FASTA and FASTQ (e.g. Biopython). Thanks, Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/