Thank you,

Peter

On Wed, Feb 1, 2017 at 3:11 PM, Eduardo de Paiva Alves
<alves.edua...@gmail.com> wrote:
> Hi Peter,
>
> I am wrapping https://rostlab.org/owiki/index.php/Tmseg which takes a
> PSSM matrix as one of the inputs so I will add the psiblast locally
> and test and let yo know how it goes.
>
> Thank you
>
> Eduardo
>
> On 01/02/2017 10:10, "Peter Cock" <p.j.a.c...@googlemail.com> wrote:
>
>
> Hi Eduardo,
>
>
> Certainly when Luobin Yang submitted the early work on the
> PSI BLAST wrapper we need the PSSM datatype to be defined,
> but as you note, that has been done:
>
> https://github.com/peterjc/galaxy_blast/commit/65252ee61fdd98e52454ff045fa069f04ec40c06
>
> According to the minimal notes I made on the issue for finishing
> the PSI BLAST wrapper, it is just help text and unit tests needed
> (which would include active user testing):
>
> https://github.com/peterjc/galaxy_blast/issues/19
>
> If you are a PSI BLAST user, it would be very helpful to have
> your input here.
>
> Right now the wrapper is on the TravisCI blacklist because
> it would fail testing. Likewise it is not included in the Tool Shed.
>
> Peter
>
> On Wed, Feb 1, 2017 at 9:47 AM, De paiva Alves, Eduardo
> <eduardoal...@abdn.ac.uk> wrote:
> Peter
>
> I noticed there is now a PSSM datatype which is used by NCBI BLAST+
> makeprofiledb. Does that allow you to remove psiblast from blacklist in
> your repository?
>
>
> https://github.com/peterjc/galaxy_blast/blob/13d5b6deca0663d7f1301428574720
> b19aea1380/.tt_blacklist
>
>
> Thank you
>
> Eduardo
>
>
> On Tue, Feb 5, 2013 at 4:28 PM, Peter Cock <[hidden email]> wrote:
> Thanks Luobin,
>
> I've checked that into my development repository (on my tools branch):
> https://bitbucket.org/peterjc/galaxy-central/commits/f8f43f8494abdd228998d4
> e9fe67b0f2378494e0
>
> That will allow me to track changes etc as we work on the datatypes.
> Note I am not yet including ncbi_psiblast_wrapper.xml on the Galaxy
> Tool Shed.
>
> Regards,
>
> Peter
>
>
>
> The University of Aberdeen is a charity registered in Scotland, No SC013683.
> Tha Oilthigh Obar Dheathain na charthannas clàraichte ann an Alba, Àir. 
> SC013683
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