That's a little weird, I don't think relying on the system's
LD_LIBRARY_PATH is good practice.
Maybe you could try what was suggested in the last answer here:
On 19 April 2017 at 17:57, Matthias Bernt <m.be...@ufz.de> wrote:
> Dear list,
> Just found out that conda is not installing on our CentOS6.8 installation
> (might be related to earlier messages).
> The problem is that the shell script installing conda unsets the
> LD_LIBRARY_PATH which makes tar dysfunctional (tar is called by the
> The command line that is executed during galaxy's installation is
> wget -q --recursive -O '/tmp/conda_install7tWo7r.sh' '
> https://repo.continuum.io/miniconda/Miniconda3-4.2.12-Linux-x86_64.sh' &&
> bash '/tmp/conda_install7tWo7r.sh' -b -p
> && /gpfs1/data/galaxy_server/galaxy-dev/_conda/bin/conda install -y -q
> Removing the unset LD_LIBRARY_PATH line (and fiddling around with some
> file size checks) is (seemingly) successful.
> There is an open issue on the conda github:
> Any suggestions? The line removal procedure seems to be quite complicated
> in an automated ansible installation which I try to achieve.
> Matthias Bernt
> Bioinformatics Service
> Molekulare Systembiologie (MOLSYB)
> Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
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