That's a little weird, I don't think relying on the system's LD_LIBRARY_PATH is good practice. Maybe you could try what was suggested in the last answer here: https://serverfault.com/questions/372987/centos-usr-local-lib-system-wide-ld-library-path .
On 19 April 2017 at 17:57, Matthias Bernt <m.be...@ufz.de> wrote: > Dear list, > > Just found out that conda is not installing on our CentOS6.8 installation > (might be related to earlier messages). > > The problem is that the shell script installing conda unsets the > LD_LIBRARY_PATH which makes tar dysfunctional (tar is called by the > installer). > > The command line that is executed during galaxy's installation is > > wget -q --recursive -O '/tmp/conda_install7tWo7r.sh' ' > https://repo.continuum.io/miniconda/Miniconda3-4.2.12-Linux-x86_64.sh' && > bash '/tmp/conda_install7tWo7r.sh' -b -p > '/gpfs1/data/galaxy_server/galaxy-dev/_conda' > && /gpfs1/data/galaxy_server/galaxy-dev/_conda/bin/conda install -y -q > conda=4.2.13 > > Removing the unset LD_LIBRARY_PATH line (and fiddling around with some > file size checks) is (seemingly) successful. > > There is an open issue on the conda github: > https://github.com/conda/conda/issues/3632 > > Any suggestions? The line removal procedure seems to be quite complicated > in an automated ansible installation which I try to achieve. > > Cheers, > Matthias > > -- > > ------------------------------------------- > Matthias Bernt > Bioinformatics Service > Molekulare Systembiologie (MOLSYB) > Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/ > Helmholtz Centre for Environmental Research GmbH - UFZ > Permoserstraße 15, 04318 Leipzig, Germany > Phone +49 341 235 482296, > m.be...@ufz.de, www.ufz.de > > Sitz der Gesellschaft/Registered Office: Leipzig > Registergericht/Registration Office: Amtsgericht Leipzig > Handelsregister Nr./Trade Register Nr.: B 4703 > Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig > Wilfried Kraus > Wissenschaftlicher Geschäftsführer/Scientific Managing Director: > Prof. Dr. Dr. h.c. Georg Teutsch > Administrative Geschäftsführerin/ Administrative Managing Director: > Prof. Dr. Heike Graßmann > ------------------------------------------- > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/ >
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