Bjoern,
Thanks for the response.
I agree with the first approach (admin control of the per tool environment). Do
you know… are there docs or similar resources you could point me to that
describe how to achieve this?
Thanks again,
David






On Sun, May 28, 2017 4:41 AM, Björn Grüning bjoern.gruen...@gmail.com  wrote:
Hi David,




this is possible via the GALAXY_SLOTS mechanism. An admin can give every

tool it's own environment and can set GALAXY_SLOTS dynamically.

A user can not do this, as this is highly dependent on the node this

tool will run and normally a user does not know about this.




However, if you really want to offer this to a user, Galaxy also offers

to enable this option per tool level and will add additional parameter

fields to set GALAXY_SLOTS as a user.




Cheers,

Bjoern




Am 26.05.2017 um 20:23 schrieb David Kovalic:

> Hi,

> 

> Is it possible, and if so how, to run the galaxy devteam

> (version 546ada4a9f43) of bwa_mem with the "-t" option and a value >1?

> 

> "-t INT number of threads [1]"

> 

> 

> This would be quite useful, and used, for accelerating single bwa mem jobs.

> 

> Thanks,

> 

> David

> 

> 

> 

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