Bjoern,
Thanks so much, I'll check it out.
If I can't figure this out I am sure I can ask around in Montpellier at GCC'17!
I am looking forward to the meeting and being able to visit Montpellier for the
first time ever
The help is greatly appreciated.
David  





On Thu, Jun 1, 2017 2:21 PM, Björn Grüning bjoern.gruen...@gmail.com  wrote:
HI David,




have a look at https://galaxyproject.org/admin/config/jobs/




and this config file:




https://github.com/galaxyproject/galaxy/blob/dev/config/job_resource_params_conf.xml.sample




and here:




https://github.com/galaxyproject/galaxy/blob/dev/config/job_conf.xml.sample_advanced#L791




I couldn't find more information, hope this gets you started!

Cheers,

Bjoern




Am 01.06.2017 um 20:48 schrieb David Kovalic:

> Bjoern,

> 

> Thanks for the response.

> 

> I agree with the first approach (admin control of the per tool

> environment). Do you know… are there docs or similar resources you could

> point me to that describe how to achieve this?

> 

> Thanks again,

> 

> David

> 

> 

> 

> On Sun, May 28, 2017 4:41 AM, Björn Grüning bjoern.gruen...@gmail.com

> <mailto:bjoern.gruen...@gmail.com> wrote:

> 

> __

> 

> Hi David,

> 

> 

> this is possible via the GALAXY_SLOTS mechanism. An admin can give every

> 

> tool it's own environment and can set GALAXY_SLOTS dynamically.

> 

> A user can not do this, as this is highly dependent on the node this

> 

> tool will run and normally a user does not know about this.

> 

> 

> However, if you really want to offer this to a user, Galaxy also offers

> 

> to enable this option per tool level and will add additional parameter

> 

> fields to set GALAXY_SLOTS as a user.

> 

> 

> Cheers,

> 

> Bjoern

> 

> 

> Am 26.05.2017 um 20:23 schrieb David Kovalic:

> 

> > Hi,

> 

> >

> 

> > Is it possible, and if so how, to run the galaxy devteam

> 

> > (version 546ada4a9f43) of bwa_mem with the "-t" option and a value >1?

> 

> >

> 

> > "-t INT number of threads [1]"

> 

> >

> 

> >

> 

> > This would be quite useful, and used, for accelerating single bwa

> mem jobs.

> 

> >

> 

> > Thanks,

> 

> >

> 

> > David

> 

> >

> 

> >

> 

> >

> 

> > ___________________________________________________________

> 

> > Please keep all replies on the list by using "reply all"

> 

> > in your mail client. To manage your subscriptions to this

> 

> > and other Galaxy lists, please use the interface at:

> 

> > https://lists.galaxyproject.org/

> 

> >

> 

> > To search Galaxy mailing lists use the unified search at:

> 

> > http://galaxyproject.org/search/

> 

> >

> 

>
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