Try:

planemo lint --fail_level error sleepwaste.xml

The default is to fail if there are warnings.

Peter


On Wed, Jul 12, 2017 at 3:55 PM, Matthias Bernt <m.be...@ufz.de> wrote:
> Hi Peter,
>
> I just call planemo l sleepwaste.xml
>
> Best,
> Matthias
>
>
> On 12.07.2017 16:54, Peter Cock wrote:
>>
>> How are you running planemo lint - in particular is it set
>> to fail if there are any warnings present (like your missing
>> citation warning)?
>>
>> Peter
>>
>> On Wed, Jul 12, 2017 at 3:52 PM, Matthias Bernt <m.be...@ufz.de> wrote:
>>>
>>> Dear list,
>>>
>>> In order to test the job resubmission feature I wrote a little tool for
>>> galaxy that just wastes a specified (minimum) time and memory (using
>>> different programming languages) for testing the new DRMAA job runner
>>> that I
>>> wrote.
>>>
>>> When linting it with planemo seemingly all tests are successful, but in
>>> the
>>> end I still get a fail -- verbose mode is also of no help here.
>>>
>>> Applying linter tests... CHECK
>>> .. CHECK: 7 test(s) found.
>>> Applying linter output... CHECK
>>> .. INFO: 1 outputs found.
>>> Applying linter inputs... CHECK
>>> .. INFO: Found 3 input parameters.
>>> Applying linter help... CHECK
>>> .. CHECK: Tool contains help section.
>>> .. CHECK: Help contains valid reStructuredText.
>>> Applying linter general... CHECK
>>> .. CHECK: Tool defines a version [0.1.0].
>>> .. CHECK: Tool defines a name [Waste time and memory].
>>> .. CHECK: Tool defines an id [sleepwaste].
>>> .. CHECK: Tool targets 16.01 Galaxy profile.
>>> Applying linter command... CHECK
>>> .. INFO: Tool contains a command.
>>> Applying linter citations... WARNING
>>> .. WARNING: No citations found, consider adding citations to your tool.
>>> Applying linter tool_xsd... CHECK
>>> .. INFO: File validates against XML schema.
>>> Failed linting
>>>
>>> The test of the tool are all successful. Any ideas what is wrong?
>>>
>>> Once the problems are solved, would such a tool also be useful in the
>>> toolshed?
>>>
>>> Cheers,
>>> Matthias
>>>
>>>
>>>
>>> --
>>>
>>> -------------------------------------------
>>> Matthias Bernt
>>> Bioinformatics Service
>>> Molekulare Systembiologie (MOLSYB)
>>> Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
>>> Helmholtz Centre for Environmental Research GmbH - UFZ
>>> Permoserstraße 15, 04318 Leipzig, Germany
>>> Phone +49 341 235 482296,
>>> m.be...@ufz.de, www.ufz.de
>>>
>>> Sitz der Gesellschaft/Registered Office: Leipzig
>>> Registergericht/Registration Office: Amtsgericht Leipzig
>>> Handelsregister Nr./Trade Register Nr.: B 4703
>>> Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
>>> MinDirig
>>> Wilfried Kraus
>>> Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
>>> Prof. Dr. Dr. h.c. Georg Teutsch
>>> Administrative Geschäftsführerin/ Administrative Managing Director:
>>> Prof. Dr. Heike Graßmann
>>> -------------------------------------------
>>>
>>> ___________________________________________________________
>>> Please keep all replies on the list by using "reply all"
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>
>
> --
>
> -------------------------------------------
> Matthias Bernt
> Bioinformatics Service
> Molekulare Systembiologie (MOLSYB)
> Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
> Helmholtz Centre for Environmental Research GmbH - UFZ
> Permoserstraße 15, 04318 Leipzig, Germany
> Phone +49 341 235 482296,
> m.be...@ufz.de, www.ufz.de
>
> Sitz der Gesellschaft/Registered Office: Leipzig
> Registergericht/Registration Office: Amtsgericht Leipzig
> Handelsregister Nr./Trade Register Nr.: B 4703
> Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig
> Wilfried Kraus
> Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
> Prof. Dr. Dr. h.c. Georg Teutsch
> Administrative Geschäftsführerin/ Administrative Managing Director:
> Prof. Dr. Heike Graßmann
> -------------------------------------------
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