Good idea, pull request submitted:

https://github.com/galaxyproject/planemo/pull/709

Peter

On Wed, Jul 12, 2017 at 4:03 PM, Matthias Bernt <m.be...@ufz.de> wrote:
> Perfect. Thanks a lot. Maybe one could add a note to planemo --help that
> command specific help can be obtained with planemo command --help.
>
> Best,
> Matthias
>
>
> On 12.07.2017 16:57, Peter Cock wrote:
>>
>> Try:
>>
>> planemo lint --fail_level error sleepwaste.xml
>>
>> The default is to fail if there are warnings.
>>
>> Peter
>>
>>
>> On Wed, Jul 12, 2017 at 3:55 PM, Matthias Bernt <m.be...@ufz.de> wrote:
>>>
>>> Hi Peter,
>>>
>>> I just call planemo l sleepwaste.xml
>>>
>>> Best,
>>> Matthias
>>>
>>>
>>> On 12.07.2017 16:54, Peter Cock wrote:
>>>>
>>>>
>>>> How are you running planemo lint - in particular is it set
>>>> to fail if there are any warnings present (like your missing
>>>> citation warning)?
>>>>
>>>> Peter
>>>>
>>>> On Wed, Jul 12, 2017 at 3:52 PM, Matthias Bernt <m.be...@ufz.de> wrote:
>>>>>
>>>>>
>>>>> Dear list,
>>>>>
>>>>> In order to test the job resubmission feature I wrote a little tool for
>>>>> galaxy that just wastes a specified (minimum) time and memory (using
>>>>> different programming languages) for testing the new DRMAA job runner
>>>>> that I
>>>>> wrote.
>>>>>
>>>>> When linting it with planemo seemingly all tests are successful, but in
>>>>> the
>>>>> end I still get a fail -- verbose mode is also of no help here.
>>>>>
>>>>> Applying linter tests... CHECK
>>>>> .. CHECK: 7 test(s) found.
>>>>> Applying linter output... CHECK
>>>>> .. INFO: 1 outputs found.
>>>>> Applying linter inputs... CHECK
>>>>> .. INFO: Found 3 input parameters.
>>>>> Applying linter help... CHECK
>>>>> .. CHECK: Tool contains help section.
>>>>> .. CHECK: Help contains valid reStructuredText.
>>>>> Applying linter general... CHECK
>>>>> .. CHECK: Tool defines a version [0.1.0].
>>>>> .. CHECK: Tool defines a name [Waste time and memory].
>>>>> .. CHECK: Tool defines an id [sleepwaste].
>>>>> .. CHECK: Tool targets 16.01 Galaxy profile.
>>>>> Applying linter command... CHECK
>>>>> .. INFO: Tool contains a command.
>>>>> Applying linter citations... WARNING
>>>>> .. WARNING: No citations found, consider adding citations to your tool.
>>>>> Applying linter tool_xsd... CHECK
>>>>> .. INFO: File validates against XML schema.
>>>>> Failed linting
>>>>>
>>>>> The test of the tool are all successful. Any ideas what is wrong?
>>>>>
>>>>> Once the problems are solved, would such a tool also be useful in the
>>>>> toolshed?
>>>>>
>>>>> Cheers,
>>>>> Matthias
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>>
>>>>> -------------------------------------------
>>>>> Matthias Bernt
>>>>> Bioinformatics Service
>>>>> Molekulare Systembiologie (MOLSYB)
>>>>> Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
>>>>> Helmholtz Centre for Environmental Research GmbH - UFZ
>>>>> Permoserstraße 15, 04318 Leipzig, Germany
>>>>> Phone +49 341 235 482296,
>>>>> m.be...@ufz.de, www.ufz.de
>>>>>
>>>>> Sitz der Gesellschaft/Registered Office: Leipzig
>>>>> Registergericht/Registration Office: Amtsgericht Leipzig
>>>>> Handelsregister Nr./Trade Register Nr.: B 4703
>>>>> Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
>>>>> MinDirig
>>>>> Wilfried Kraus
>>>>> Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
>>>>> Prof. Dr. Dr. h.c. Georg Teutsch
>>>>> Administrative Geschäftsführerin/ Administrative Managing Director:
>>>>> Prof. Dr. Heike Graßmann
>>>>> -------------------------------------------
>>>>>
>>>>> ___________________________________________________________
>>>>> Please keep all replies on the list by using "reply all"
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>>>
>>>
>>>
>>> --
>>>
>>> -------------------------------------------
>>> Matthias Bernt
>>> Bioinformatics Service
>>> Molekulare Systembiologie (MOLSYB)
>>> Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
>>> Helmholtz Centre for Environmental Research GmbH - UFZ
>>> Permoserstraße 15, 04318 Leipzig, Germany
>>> Phone +49 341 235 482296,
>>> m.be...@ufz.de, www.ufz.de
>>>
>>> Sitz der Gesellschaft/Registered Office: Leipzig
>>> Registergericht/Registration Office: Amtsgericht Leipzig
>>> Handelsregister Nr./Trade Register Nr.: B 4703
>>> Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board:
>>> MinDirig
>>> Wilfried Kraus
>>> Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
>>> Prof. Dr. Dr. h.c. Georg Teutsch
>>> Administrative Geschäftsführerin/ Administrative Managing Director:
>>> Prof. Dr. Heike Graßmann
>>> -------------------------------------------
>
>
> --
>
> -------------------------------------------
> Matthias Bernt
> Bioinformatics Service
> Molekulare Systembiologie (MOLSYB)
> Helmholtz-Zentrum für Umweltforschung GmbH - UFZ/
> Helmholtz Centre for Environmental Research GmbH - UFZ
> Permoserstraße 15, 04318 Leipzig, Germany
> Phone +49 341 235 482296,
> m.be...@ufz.de, www.ufz.de
>
> Sitz der Gesellschaft/Registered Office: Leipzig
> Registergericht/Registration Office: Amtsgericht Leipzig
> Handelsregister Nr./Trade Register Nr.: B 4703
> Vorsitzender des Aufsichtsrats/Chairman of the Supervisory Board: MinDirig
> Wilfried Kraus
> Wissenschaftlicher Geschäftsführer/Scientific Managing Director:
> Prof. Dr. Dr. h.c. Georg Teutsch
> Administrative Geschäftsführerin/ Administrative Managing Director:
> Prof. Dr. Heike Graßmann
> -------------------------------------------
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