Hi Matthias,

please note that this repo is 4 years old. We have changed the wrappers
quite a bit in the last years and now you have it here:

suite_openms

Or every tool has its own repo. Last update yesterday.
Hope that helps,
Bjoern

P.S. I have deprecated the old repo.

On 10.08.2017 15:03, Matthias Bernt wrote:
> Hi,
> 
> I got an error from OpenMS which seems to be related to python3:
> 
> Fatal error: Exit code 1 (Error running OpenMS tool.)
>   File
> "/gpfs1/data/galaxy_server/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms/openms_wrapper.py",
> line 22
>     print "Running shell command %s" % command
>                                    ^
> SyntaxError: Missing parentheses in call to 'print'
> 
> Command line was
> 
> python
> /gpfs1/data/galaxy_server/galaxy/shed_tools/toolshed.g2.bx.psu.edu/repos/galaxyp/openms/42b843627623/openms/openms_wrapper.py
> --executable 'DecoyDatabase' --config
> /gpfs1/data/galaxy_server/galaxy/jobs_dir/000/240/tmpYOuUf9
> 
> I would volunteer to improve this. But where can I find the sources?
> Would it be better to
> - use the compatibility import (easiest)
> - switch to print()
> - use logging
> 
> Best,
> Matthias
> 
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