Hello, I got a new Galaxy install using 17.01 latest. I wanted to get the same tools as are in Galaxy main. I installed ephemeris with pip, used get-tool-list to get a yml file with tools, and then shed-install to my Galaxy server. After a few hours, 452 tools got successfully installed, 0 skipped and 0 errored. However, when looking at Galaxy's "manage installed tools", all of the tools that have dependencies are in gray state - missing dependencies. (and error out if ran). If I select a tool, and go to "repository actions", "manage tool dependencies", I see that dependencies are marked as never installed. If I select dependencies and click install, they install - really fast (too fast?), and then that tool works fine... but I'm trying to avoid manually telling each tool to install dependencies - there are a lot of them :)
Any suggestions? ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
