Hi Nicola,
Again I appreciate your help Nicola. I dropped the database and created new
one and then I restarted galaxy. Once galaxy is up then I went to the login
page and used the username without the @example.com part as you suggested. Now
I got a different error as shown below. Something to do with the ldap_ad.py
file. Is there anything I need to add to this file? Or this is because of my
configuration file?
galaxy.auth.providers.ldap_ad ERROR 2017-11-13 14:55:50,929 LDAP authenticate:
search exception
Traceback (most recent call last):
File "/gpfs/home/gal_admin/galaxy/lib/galaxy/auth/providers/ldap_ad.py", line
126, in authenticate
l = ldap.initialize(_get_subs(options, 'server', params))
File
"/gpfs/home/gal_admin/galaxy/.venv/lib/python2.7/site-packages/ldap/functions.py",
line 94, in initialize
return LDAPObject(uri,trace_level,trace_file,trace_stack_limit)
File
"/gpfs/home/gal_admin/galaxy/.venv/lib/python2.7/site-packages/ldap/ldapobject.py",
line 79, in __init__
self._l =
ldap.functions._ldap_function_call(ldap._ldap_module_lock,_ldap.initialize,uri)
File
"/gpfs/home/gal_admin/galaxy/.venv/lib/python2.7/site-packages/ldap/functions.py",
line 66, in _ldap_function_call
result = func(*args,**kwargs)
LDAPError: (2, 'No such file or directory')
galaxy.auth DEBUG 2017-11-13 14:55:50,931 Email: , Username , stopping due to
failed non-continue
Hakeem Almabrazi
Senior Software Architect
Sidra Medical and Research Center
Out-Patient Clinic
PO Box 26999 , Al Luqta Street
Education City North Campus
Qatar Foundation
Tel:+974-4003-7458 (ext:37458) | Mobile: +974-7479-4201
[email protected]<mailto:[email protected]> |
www.sidra.org<http://www.sidra.org/>
[Description: C:\Users\fgenevieve\AppData\Local\Microsoft\Windows\Temporary
Internet Files\Content.Outlook\O53SYTUP\Sidra-Logo-Member of QF Short.PNG]
From: Nicola Soranzo [mailto:[email protected]] On Behalf Of Nicola
Soranzo
Sent: Monday, November 13, 2017 1:17 PM
To: Hakeem Almabrazi; [email protected]
Subject: Re: [galaxy-dev] Active Directory Authentication question
Hi Hakeem,
since you are using:
<login-use-username>True</login-use-username>
you need to use your username without the "@mydomain.com" for the first login.
After the first successful login, Galaxy will store the email associated to
your username on the AD server in its user database and you will be able to use
it as an alternative to your username to login.
Cheers,
Nicola
On 12/11/17 10:46, Hakeem Almabrazi wrote:
HI Nicola,
Thank you for your response. I have added your suggestions but still I am
getting the same error; the username is None if I used the
[email protected]<mailto:[email protected]> as a login in the login page.
Here is the error log I keep getting.
galaxy.webapps.galaxy.controllers.user DEBUG 2017-11-12 13:35:38,507
trans.app.config.auth_config_file: ./config/auth_conf.xml
galaxy.auth.providers.ldap_ad DEBUG 2017-11-12 13:35:38,507 LDAP authenticate:
email is [email protected]<mailto:[email protected]>
galaxy.auth.providers.ldap_ad DEBUG 2017-11-12 13:35:38,507 LDAP authenticate:
username is None
galaxy.auth.providers.ldap_ad DEBUG 2017-11-12 13:35:38,507 LDAP authenticate:
options are {'bind-user':
'{sAMAccountName}@research.sidra.local<mailto:sAMAccountName%[email protected]>',
'search-fields': 'sAMAccountName,mail', 'login-use-username': 'True',
'allow-register': 'False', 'auto-register-email': '{mail}', 'server': '
myAD.mydomain.example.local ', 'auto-register': 'True', 'search-base':
'cn=Users,dc=mydomian,dc=example,dc=local', 'auto-register-username':
'{sAMAccountName}', 'search-password': 'PASSWORD', 'search-user':
'[email protected]<mailto:[email protected]>',
'bind-password': '{password}', 'allow-password-change': 'False'}
galaxy.auth.providers.ldap_ad DEBUG 2017-11-12 13:35:38,508 LDAP authenticate:
username must be used to login, cannot be None
And here is my updated auth_config.xml file
<?xml version="1.0"?>
<auth>
<authenticator>
<type>ldap</type>
<options>
<allow-register>False</allow-register>
<auto-register>True</auto-register>
<allow-password-change>False</allow-password-change>
<server>myAD.mydomain.example.local</server>
<login-use-username>True</login-use-username>
<search-fields>sAMAccountName,mail</search-fields>
<search-base>cn=Users,dc=mydomain,dc=example,dc=local</search-base>
<search-user>[email protected]<mailto:[email protected]></search-user>
<search-password>PASSWORD</search-password>
<bind-user>{sAMAccountName}@mydomain.example.local<mailto:sAMAccountName%[email protected]></bind-user>
<bind-password>{password}</bind-password>
<auto-register-username>{sAMAccountName}</auto-register-username>
<auto-register-email>{mail}</auto-register-email>
</options>
</authenticator>
<authenticator>
<type>localdb</type>
<options>
<allow-password-change>true</allow-password-change>
</options>
</authenticator>
</auth>
I will appreciate it if you think the file looks okay to you.
Thank you
Hakeem Almabrazi
Senior Software Architect
Sidra Medical and Research Center
Out-Patient Clinic
PO Box 26999 , Al Luqta Street
Education City North Campus
Qatar Foundation
Tel:+974-4003-7458 (ext:37458) | Mobile: +974-7479-4201
[email protected]<mailto:[email protected]> |
www.sidra.org<http://www.sidra.org/>
[Description:
C:\Users\fgenevieve\AppData\Local\Microsoft\Windows\Temporary
Internet Files\Content.Outlook\O53SYTUP\Sidra-Logo-Member of
QF Short.PNG]
From: Nicola Soranzo [mailto:[email protected]] On Behalf Of Nicola
Soranzo
Sent: Thursday, November 09, 2017 5:44 PM
To: Hakeem Almabrazi;
[email protected]<mailto:[email protected]>
Subject: Re: [galaxy-dev] Active Directory Authentication question
Hi Hakeem,
a couple of suggestions:
- allow-register should be False
- I don't see a line with something like
<server>ldap://dc1.example.com</server> , but I suppose you have omitted it
- if your AD server doesn't allow anonymous searches (like in my case), you
need to specify also:
<search-user>cn=jsmith,ou=People,dc=domain,dc=com</search-user>
<search-password>mysecret</search-password>
- you definitely need to specify an adapted version of these:
<bind-user>{sAMAccountName}@dc1.example.com<mailto:[email protected]></bind-user>
<bind-password>{password}</bind-password>
<auto-register-username>{sAMAccountName}</auto-register-username>
<auto-register-email>{mail}</auto-register-email>
Hope that helps!
Cheers,
Nicola
On 09/11/17 11:24, Hakeem Almabrazi wrote:
Hello,
I have installed the latest galaxy and I would like to use the MS Active
Directory 2012 for authentication. I tried to follow the instructions outlined
here https://galaxyproject.org/admin/config/external-user-auth/ without
touching the lib/galaxy/auth/providers/ldap_ad_py since I thought this is
related to ldap not AD.
Here is the exact auth_config.xml file
+++++++++++++++++++++++++
<?xml version="1.0"?>
<auth>
<authenticator>
<type>ldap</type>
<options>
<allow-register>True</allow-register>
<auto-register>True</auto-register>
<allow-password-change>False</allow-password-change>
<login-use-username>True</login-use-username>
<!-- For Active Directory: -->
<search-fields>sAMAccountName,mail</search-fields>
<search-base>dc=dc1,dc=example,dc=com</search-base>
<!-- If login-use-username is True -->
<search-filter>(&(objectClass=user)(sAMAccountName={username}))</search-filter>
</options>
</authenticator>
</auth>
+++++++++++++++++
When I try to login using a real user email and pwd, it says "No user of valid
password" in the Galaxy page. And here is the error log I keep getting.
galaxy.webapps.galaxy.controllers.user DEBUG 2017-11-09 13:55:37,940
trans.app.config.auth_config_file: ./config/auth_conf.xml
galaxy.auth.providers.ldap_ad DEBUG 2017-11-09 13:55:37,940 LDAP authenticate:
email is [email protected]<mailto:[email protected]>
galaxy.auth.providers.ldap_ad DEBUG 2017-11-09 13:55:37,940 LDAP authenticate:
username is None
galaxy.auth.providers.ldap_ad DEBUG 2017-11-09 13:55:37,940 LDAP authenticate:
options are {'search-fields': 'sAMAccountName,mail', 'login-use-username':
'True', 'allow-register': 'True', 'auto-register': 'True', 'search-base':
'dc=dc1,dc=example,dc=com', 'search-filter':
'(&(objectClass=user)(sAMAccountName={username}))', 'allow-password-change':
'False'}
galaxy.auth.providers.ldap_ad DEBUG 2017-11-09 13:55:37,940 LDAP authenticate:
username must be used to login, cannot be None
galaxy.auth DEBUG 2017-11-09 13:55:37,941 Email: , Username , stopping due to
failed non-continue
Is there anything missing from my auth_config.xml file?
I appreciate any kind of help figuring this out.
Best regards,
Hak
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Disclaimer: This email and its attachments may be confidential and are intended
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the intended recipient, any reading, printing, storage, disclosure, copying or
any other action taken in respect of this e-mail is prohibited and may be
unlawful. If you are not the intended recipient, please notify the sender
immediately by using the reply function and then permanently delete what you
have received. Any views or opinions expressed are solely those of the author
and do not necessarily represent those of Sidra Medical and Research Center.
Disclaimer: This email and its attachments may be confidential and are intended
solely for the use of the individual to whom it is addressed. If you are not
the intended recipient, any reading, printing, storage, disclosure, copying or
any other action taken in respect of this e-mail is prohibited and may be
unlawful. If you are not the intended recipient, please notify the sender
immediately by using the reply function and then permanently delete what you
have received. Any views or opinions expressed are solely those of the author
and do not necessarily represent those of Sidra Medical and Research Center.
___________________________________________________________
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in your mail client. To manage your subscriptions to this
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