On Tue, Apr 10, 2018 at 3:28 PM, Jochen Bick <jochen.b...@usys.ethz.ch> wrote: > Hi Peter, > > >> >> https://github.com/CollardT/Ballgown-Wrapper > > I can contact report the issue on github.
I think that would be best. > It looks like its looking for > a variable called dataset with is not defined in the input part. > > this looks like python code?: > > ##------------------------------------------------------------------------------------ > ## This function returns the name of the sample associated to a given file > ##------------------------------------------------------------------------------------ > #def get_sample_name($dataset, $sample_mapping): > ##If the file with samples mapping was provided > #if $sample_mapping != None: > #return $sample_mapping.get($dataset.name, None) > ##Otherwise with extract the sample name from the filename > #else: > #return str($dataset.element_identifier) > #end if > #end def > > Cheers Jochen Sort of. It is a templating language called Cheetah which supports of lot of Python syntax: http://cheetahtemplate.org/ Most Galaxy wrappers at most use this for if-statements and for-loops, this might be the first time I've seen complicated functions being defined in Cheetah code like this. It would help greatly if the tool author provided a test dataset (and even better used this to define a tool self-test). Peter ___________________________________________________________ Please keep all replies on the list by using "reply all" in your mail client. To manage your subscriptions to this and other Galaxy lists, please use the interface at: https://lists.galaxyproject.org/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/
