Hi Jochen,
Theo also opened a pull request to submit it to IUC:

https://github.com/galaxyproject/tools-iuc/pull/1366

but hasn't updated it after August 2017.

Cheers,
Nicola

On 10/04/18 14:37, Jochen Bick wrote:
Hej Peter,

thanks for the quick reply. My galaxy is a release_17.05

I think the xml is also broken.

Cheers Jochen

On 10.04.2018 15:28, Peter Cock wrote:
Are you trying to install this?

https://toolshed.g2.bx.psu.edu/view/theo.collard/ballgown_wrapper/05977e96375b

If so, it does set out its requirements:

     <requirements>
         <requirement type="package"
version="2.2.0">bioconductor-ballgown</requirement>
         <requirement type="package" version="0.5.0">r-dplyr</requirement>
         <requirement type="package" version="1.3.2">r-optparse</requirement>
     </requirements>

However, your Galaxy would have to be using BioConda to do this.
This wrapper does not include a legacy Galaxy XML file to declare
its package dependencies.

What version of Galaxy do you have?

Peter

On Tue, Apr 10, 2018 at 2:16 PM, Jochen Bick <jochen.b...@usys.ethz.ch> wrote:
Hi,

I'm trying to install Ballgown but it throws some error message after
running it:

cannot find 'dataset' while searching for 'param_name.dataset.dataset'

the script does not have test-data file and it also does not install the
requirements.

Cheers Jochen

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